Pairwise Alignments

Query, 161 a.a., regulator of sigma D (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 165 a.a., anti-RNA polymerase sigma 70 factor (RefSeq) from Shewanella sp. ANA-3

 Score =  308 bits (789), Expect = 3e-89
 Identities = 149/161 (92%), Positives = 153/161 (95%)

Query: 1   MLRELEKAEQKWGGSNKLIDQWLENRRKLLVHYCQIAGLPPYTNAEKSLPSFEHVKSFCD 60
           MLRELEKAEQKWGGSNKLIDQWLENRRKLLVHYCQIAGLPPY  AEKSLPSF+HVKSFCD
Sbjct: 5   MLRELEKAEQKWGGSNKLIDQWLENRRKLLVHYCQIAGLPPYGKAEKSLPSFDHVKSFCD 64

Query: 61  LLVDYVSEGHFEVYDQVINACEKFGAPCKAAIQQVLPKITPTTNAALDFNDKYAETQDDQ 120
           LLVDYVSEGHFEVYDQV+NACEKFGA  K   QQVLPKITPTTNAALDFNDKYAE QDDQ
Sbjct: 65  LLVDYVSEGHFEVYDQVVNACEKFGASSKTLAQQVLPKITPTTNAALDFNDKYAEAQDDQ 124

Query: 121 VLYQLDKDLSELAHTMETRFELEDKLLEVLHSKYSEHAQQA 161
           VLYQLDKDLSELAHTMETRFELEDKLLEVLH++YSEHAQQA
Sbjct: 125 VLYQLDKDLSELAHTMETRFELEDKLLEVLHNQYSEHAQQA 165