Pairwise Alignments

Query, 439 a.a., type I restriction-modification system, S subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 462 a.a., restriction endonuclease subunit S from Vibrio cholerae E7946 ATCC 55056

 Score = 65.9 bits (159), Expect = 3e-15
 Identities = 99/406 (24%), Positives = 177/406 (43%), Gaps = 73/406 (17%)

Query: 62  EDKTKYWDVELNNLKKYQLAINDILI----GMDGSLVGKNYAYLKQSDLPALLVQRVARL 117
           ++K  Y  +     +   L   D+LI    G D +LVG+   + KQ   PA+    VA++
Sbjct: 90  DEKLTYRSIPAKEHQGRLLKNGDLLIEKSGGGDKTLVGRVVLFDKQ--YPAVTSNFVAKM 147

Query: 118 RAKSNLHSKYLYYMYATDF--WLDYVEVVKTNSGIPHISNGDIKNFRFPFPPLPEQQKIA 175
             K  + S +L Y+++  +   ++Y+ + +T +GI ++      N +F  P   EQ +IA
Sbjct: 148 TPKEWVISGFLKYVFSALYNNGVNYLSIKQT-TGIQNLDASSYLNEKFCIPQKEEQYEIA 206

Query: 176 AIL----TSVDEVIEKTQAQIDKLKDLKSGMMQELLTKGVGIKQGDKYVPHIEFKDSPVG 231
             L    T ++E I   Q QI+ LK+ K  ++Q+ +T+G+      KY   +++    +G
Sbjct: 207 KFLDNKTTQINEAIAIKQKQIELLKERKQIIIQQAVTQGLNPDATMKY-SGVDW----IG 261

Query: 232 KIPKSWEVKPLNSVVLKI-----------IDCEHKT--APYVDKSEYLVVRT----SNVR 274
            IP  W VK    ++ +I           +   H T   P  +K+  + +      S + 
Sbjct: 262 AIPGHWIVKRAKYLLDEINERSETGLEELLSVSHMTGVTPRSEKNVTMFMAEDYTGSKLC 321

Query: 275 H-GELVLDDM-KYTHADGYAEWTNRAIPSLGDVLFTREAPAGESCLVPENTKVCMGQRMV 332
           H G+LV++ M  +  A G ++ T    PS G  +F  +    E   VP+  +       +
Sbjct: 322 HSGDLVINIMWAWMGALGVSDRTGIVSPSYG--VFREQR---EGTFVPKYLE-------M 369

Query: 333 LLRPDANVIFSNFFSLFLTSEAA---SCAIYERSIGTTVSRINIEDIKRIPCIVPPLSEQ 389
           LL+    V + N  S  L S         +++ ++G                  PP  EQ
Sbjct: 370 LLKSTKYVEYYNKVSTGLHSSRLRFYGHMLFDMALG-----------------FPPYEEQ 412

Query: 390 QE----ISKAIQSVQNSILNKQEKLQSLKNLKKALMQDLLTGKVRV 431
            +    IS+    V  +I  + E++  LK  K  L+   +TGK++V
Sbjct: 413 TQIVEYISRECSKVDEAITVQAEQVSKLKEYKTTLINSAVTGKIKV 458



 Score = 45.8 bits (107), Expect = 3e-09
 Identities = 52/233 (22%), Positives = 95/233 (40%), Gaps = 30/233 (12%)

Query: 213 IKQGDKYVPHIEFKDSPVGKIPKSWEVKPLNSVVLKIIDCEHKTAPYVDKSEYLVVRTSN 272
           IK+  KY  + +  +  +G IP  WEV  L S V +  +    + P   + E +V+R ++
Sbjct: 22  IKKMPKYESYKDSCEQWIGDIPAHWEVYRLKSAVYECSNGIWGSDPN-GRDEIVVLRVAD 80

Query: 273 VRHGELVLDDMKYTHADGYAEWTNRAIPSLGDVLFTREAPAGESCLVPENTKVCMGQRMV 332
               +L + D K T+    A+     +   GD+L  +    G+  LV          R+V
Sbjct: 81  FDDHKLKISDEKLTYRSIPAKEHQGRLLKNGDLLIEKSG-GGDKTLV---------GRVV 130

Query: 333 LLRPDANVIFSNFFSLFLTSE--------AASCAIYERSIG-------TTVSRINIEDIK 377
           L       + SNF +     E            A+Y   +        T +  ++     
Sbjct: 131 LFDKQYPAVTSNFVAKMTPKEWVISGFLKYVFSALYNNGVNYLSIKQTTGIQNLDASSYL 190

Query: 378 RIPCIVPPLSEQQEISKAIQS----VQNSILNKQEKLQSLKNLKKALMQDLLT 426
                +P   EQ EI+K + +    +  +I  KQ++++ LK  K+ ++Q  +T
Sbjct: 191 NEKFCIPQKEEQYEIAKFLDNKTTQINEAIAIKQKQIELLKERKQIIIQQAVT 243



 Score = 32.3 bits (72), Expect = 3e-05
 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 6/108 (5%)

Query: 114 VARLRAKSNLHSKYLYYMYATDFWLDYVEVVKT--NSGIPHISNGDIKNFRFPFPPLPEQ 171
           V R + +     KYL  +  +  +++Y   V T  +S         + +    FPP  EQ
Sbjct: 353 VFREQREGTFVPKYLEMLLKSTKYVEYYNKVSTGLHSSRLRFYGHMLFDMALGFPPYEEQ 412

Query: 172 QKIAAILT----SVDEVIEKTQAQIDKLKDLKSGMMQELLTKGVGIKQ 215
            +I   ++     VDE I     Q+ KLK+ K+ ++   +T  + + +
Sbjct: 413 TQIVEYISRECSKVDEAITVQAEQVSKLKEYKTTLINSAVTGKIKVTE 460