Pairwise Alignments

Query, 295 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 289 a.a., LysR family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  214 bits (545), Expect = 2e-60
 Identities = 106/288 (36%), Positives = 178/288 (61%), Gaps = 4/288 (1%)

Query: 1   MEHFSALPIFVTVVECGSFSLAGQKLGLSKSAISKRISQLEQHLGIQLLQRTTRSLSLTD 60
           M+ +  +  FV V E  SF+ AG++LG+S + +S+++  LEQ L  +LL RTTR +S+T+
Sbjct: 1   MQEWEGVSEFVAVAETESFTKAGKRLGISTAQVSRQVGALEQRLDTKLLYRTTRKVSMTE 60

Query: 61  AGARYFEYIRPAVQLTQEGLDAISELQQTPRGNLRISVPMVFGRLYIAPLIAEFLKRYPD 120
            G  Y+ + R  +   +E   A+S L+  P+G LR++ P+ +G  YI P++ +FL  YP+
Sbjct: 61  EGHLYYRHCRQVLDGLEEAERALSSLRGLPQGLLRMTAPVAYGEKYILPVVNDFLLAYPN 120

Query: 121 IQLQMQMDDKITDLIAGGFDLAIRIGELPDSSLIARKIAPCLSVICASPAYLTQHGLPMT 180
           +++ + + ++   L+  G DLAIRIG+L DSSLIA++I+  ++ +CASP YL + G P +
Sbjct: 121 VEVDIALTNRQVRLVDAGIDLAIRIGKLADSSLIAKRISQRINYVCASPDYLKRFGEPHS 180

Query: 181 PCELTQHNCLFYSYFQDGVEWSFHSPDGMQRVQPKGNYQVNNSDAINQACLDGLGIANLP 240
             EL++HNCL  ++      W F      ++++ KGN + N    +  A L GLG+  LP
Sbjct: 181 LSELSRHNCLIGNHDY----WRFLEQGRERQLKIKGNLRCNTGHGLRDAALKGLGLVQLP 236

Query: 241 RFIVEPDLQTGHLQALLTDYPLPEHGIYAVYPQRKYQPTKVTVLIEFL 288
            + +  DL+ G L ++L  Y  P  G++A+YPQ ++   KV +++EFL
Sbjct: 237 NYYIGQDLKAGRLVSVLNAYQEPNEGVWALYPQNRHLSPKVKLMVEFL 284