Pairwise Alignments

Query, 316 a.a., sodium/calcium exchanger (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 332 a.a., calcium/sodium antiporter from Vibrio cholerae E7946 ATCC 55056

 Score =  236 bits (601), Expect = 7e-67
 Identities = 130/307 (42%), Positives = 202/307 (65%), Gaps = 10/307 (3%)

Query: 10  GFLILTLGAEALVRGATTIALRLGITPLVIGLTIVAFGTSAPELAVSVKAALAGNSGIAL 69
           G  IL  GA+ LV G+  +A  +GI+PLVIG+TI+A G+SAPE+ VS  AAL G +  A+
Sbjct: 24  GLAILVWGADKLVFGSAALARNIGISPLVIGMTILAMGSSAPEMMVSATAALEGKTDTAV 83

Query: 70  GNVIGSNIVNIGLILGITALIRPIEVKSEMVKRDIPIMILASMLFWGLLLDGELSLIDGV 129
           GNV+GSNI NI LILGITA+++P+ V S +++R++P+MI  +++   +L D  L   +G+
Sbjct: 84  GNVLGSNIANIALILGITAIVKPLSVGSAVLRRELPMMIGVTLIAGAILWDNHLGFYEGI 143

Query: 130 ILLSFMLGY-LVFSYFSAKNTNDADGEVIEE------GPKNPLLSLLFIAVGISMLVGGG 182
           +L++    + LV    S K   + D  + E+      G  NP  +  ++ VG+ +L  G 
Sbjct: 144 LLIALFAAFILVMLQVSRKEKQNGDALLDEQESEIPVGVSNP-KAAFWVVVGLILLPIGA 202

Query: 183 ILFVNGAVDLAKVFGVSEIIIGLTIVAIGTSMPELVTSVLAALKGQSDIAIGNIVGSNIF 242
            + V+ AV +AK FG+S+++IGLTI+A+GTS+PEL  S+  ALKG+ D+A+GNI+GSN+F
Sbjct: 203 GMLVDNAVVIAKYFGMSDLVIGLTIIAVGTSLPELAASLAGALKGEDDMAVGNIIGSNVF 262

Query: 243 NILGILGVTAIVYP-VSGLGFQSLDFIVMLAFAVVILPFAWTGLR-IGRREGATLLIAYL 300
           NIL ++G+  ++ P +      S DF VML  +++++  A    R I R EGA LL +++
Sbjct: 263 NILAVMGLPGLLNPSLLSPEAMSRDFWVMLGVSLLLVGVALGKKRQITRLEGALLLCSFI 322

Query: 301 GYLIYLV 307
           GY+ YL+
Sbjct: 323 GYITYLL 329



 Score =  105 bits (261), Expect = 2e-27
 Identities = 55/140 (39%), Positives = 87/140 (62%), Gaps = 2/140 (1%)

Query: 4   ALSIIGGFLILTLGAEALVRGATTIALRLGITPLVIGLTIVAFGTSAPELAVSVKAALAG 63
           A  ++ G ++L +GA  LV  A  IA   G++ LVIGLTI+A GTS PELA S+  AL G
Sbjct: 188 AFWVVVGLILLPIGAGMLVDNAVVIAKYFGMSDLVIGLTIIAVGTSLPELAASLAGALKG 247

Query: 64  NSGIALGNVIGSNIVNIGLILGITALIRPIEVKSEMVKRDIPIMILASMLFWGLLL--DG 121
              +A+GN+IGSN+ NI  ++G+  L+ P  +  E + RD  +M+  S+L  G+ L    
Sbjct: 248 EDDMAVGNIIGSNVFNILAVMGLPGLLNPSLLSPEAMSRDFWVMLGVSLLLVGVALGKKR 307

Query: 122 ELSLIDGVILLSFMLGYLVF 141
           +++ ++G +LL   +GY+ +
Sbjct: 308 QITRLEGALLLCSFIGYITY 327



 Score = 98.6 bits (244), Expect = 2e-25
 Identities = 51/142 (35%), Positives = 91/142 (64%), Gaps = 2/142 (1%)

Query: 167 SLLFIAVGISMLVGGGILFVNGAVDLAKVFGVSEIIIGLTIVAIGTSMPELVTSVLAALK 226
           +++F+ +G+++LV G    V G+  LA+  G+S ++IG+TI+A+G+S PE++ S  AAL+
Sbjct: 17  AVVFLFIGLAILVWGADKLVFGSAALARNIGISPLVIGMTILAMGSSAPEMMVSATAALE 76

Query: 227 GQSDIAIGNIVGSNIFNILGILGVTAIVYPVS-GLGFQSLDFIVMLAFAVVILPFAWTGL 285
           G++D A+GN++GSNI NI  ILG+TAIV P+S G      +  +M+   ++     W   
Sbjct: 77  GKTDTAVGNVLGSNIANIALILGITAIVKPLSVGSAVLRRELPMMIGVTLIAGAILWDN- 135

Query: 286 RIGRREGATLLIAYLGYLIYLV 307
            +G  EG  L+  +  +++ ++
Sbjct: 136 HLGFYEGILLIALFAAFILVML 157