Pairwise Alignments

Query, 316 a.a., sodium/calcium exchanger (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 320 a.a., calcium/sodium antiporter from Methanococcus maripaludis S2

 Score =  174 bits (442), Expect = 2e-48
 Identities = 111/319 (34%), Positives = 178/319 (55%), Gaps = 20/319 (6%)

Query: 2   LIALSIIGGFLILTLGAEALVRGATTIALRLGITPLVIGLTIVAFGTSAPELAVSVKAAL 61
           LI+  I GG L L  G++  + G+T +A    ++  VIG TIVAFGTS PE+  S  AAL
Sbjct: 5   LISYMIFGGIL-LAYGSDWFIEGSTRVAKHFNVSNFVIGATIVAFGTSLPEIVTSSGAAL 63

Query: 62  AGNSGIALGNVIGSNIVNIGLILGITALIRPIEVKSEMVKRDIPIMILASMLFWGLLLDG 121
           +G  G+A+GN +GS I NIG+ILGI+ L+ P+ +K   + ++  I ++A++L   L  +G
Sbjct: 64  SGYPGLAVGNAVGSCIANIGIILGISVLMYPLIIKKRAIIKNGNIYLIATILLVILGYNG 123

Query: 122 ELSLIDGVILLSFMLGYLVFSYFSAKNTNDADGEVIEEGPKNPLLSLLFIAVGISMLVGG 181
             S  DG+IL  FM+ Y++   ++ K +   D E+I +       + +FI VG+  ++ G
Sbjct: 124 -FSRFDGLILFLFMITYVI---YTIKTSESDDEEIISD--LTTKKASIFIVVGLLAVILG 177

Query: 182 GILFVNGAVDLAKVFGVSEIIIGLTIVAIGTSMPELVTSVLAALKGQSDIAIGNIVGSNI 241
             LF+ GA  +A+ F V E IIG ++VA GTS+PEL +SV AA +    I +GN++GSNI
Sbjct: 178 SDLFIEGAKGIAEYFNVPESIIGFSLVAFGTSLPELASSVAAAKRKLGSIVLGNVIGSNI 237

Query: 242 FNILGILGVTAIVYPVSGLGFQSLDFIVMLAFAVVIL-------PFAWTGLR------IG 288
            N    L  +A++  +     + +   +M    +  +          +   R      I 
Sbjct: 238 ANTCIALSFSAMIVDIPKYNVELMVNTIMALLIIFTMNREKIKKMLKFKNFRTDYFSKID 297

Query: 289 RREGATLLIAYLGYLIYLV 307
           R +G + ++ YL +L YL+
Sbjct: 298 RIDGISYILIYLIFLAYLL 316