Pairwise Alignments

Query, 198 a.a., DNA-binding response regulator, LuxR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 208 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

 Score = 94.7 bits (234), Expect = 1e-24
 Identities = 59/198 (29%), Positives = 99/198 (50%), Gaps = 6/198 (3%)

Query: 3   ILLAEDQAMVRGALAALLTLAGGFTIT-QASDGDEALTLLKQQHFDLLLTDIEMPGRTGL 61
           I L +D  +VR   A LL L     +  +      A   L Q   D+ + DI MP   GL
Sbjct: 4   IALVDDHTIVRSGFAQLLNLEQDIRVQGEYESAKAAFYALTQAEVDVAIIDISMPDENGL 63

Query: 62  ELAAWLKEQHSQTKVVVITTFGRAGYIKRAIEAGVGGFLLKDAPSETLVSSIQQVMAGKR 121
            L   L++ + + K ++++ +  A ++K+A++AG  G+L K      LVS+I+ V +G+R
Sbjct: 64  SLLERLRQHNPRFKAIILSIYDSASFVKKALDAGAQGYLSKRCGPSELVSAIRTVASGRR 123

Query: 122 VIDPE-LAMMAIGDID----PLNDKERRALRFASEGKSTAEIADMLFIAEGTVRNYLSEA 176
            +  + L  ++  DI+     L  +E        +GK   EIA  LF++  TV  + +  
Sbjct: 124 YLCADALVNLSNPDINNVLADLTKREVEVFDLLVQGKEVKEIAQTLFLSHKTVHVHRANI 183

Query: 177 IAKLNASNRIDAARIAKQ 194
           ++KLN +N +D  R A Q
Sbjct: 184 LSKLNLTNNVDVIRFALQ 201