Pairwise Alignments

Query, 198 a.a., DNA-binding response regulator, LuxR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 209 a.a., two component LuxR family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score = 96.7 bits (239), Expect = 3e-25
 Identities = 58/197 (29%), Positives = 105/197 (53%), Gaps = 10/197 (5%)

Query: 3   ILLAEDQAMVRGALAALLTLAGGFTIT-QASDGDEALTLLKQQHFDLLLTDIEMPGRTGL 61
           +L+ +D  ++R  +  L+T    FT+  +A  G +AL+ + +   D++L D+ M G TGL
Sbjct: 7   VLVVDDHPLLRRGICQLITSDSDFTLFGEAGSGLDALSAIAENEPDIVLLDLNMKGMTGL 66

Query: 62  ELAAWLKEQHSQTKVVVITTFGRAGYIKRAIEAGVGGFLLKDAPSETLVSSIQQVMAGKR 121
           +    L+++   +++V++T       + R + AG  G+LLKD   + L+  ++  M G R
Sbjct: 67  DTLNALRQEGVTSRIVILTVSDAKQDVIRLVRAGADGYLLKDTEPDLLLEKLKNAMQGHR 126

Query: 122 VIDPELA--MMAIGD-------IDPLNDKERRALRFASEGKSTAEIADMLFIAEGTVRNY 172
           VI   +   +  + D       ID L  +E + L   +EGKS   I++ L I+EGTV+ +
Sbjct: 127 VISESVEDFIYELKDGADEQAWIDNLTPRELQILEQLAEGKSNRVISEQLHISEGTVKVH 186

Query: 173 LSEAIAKLNASNRIDAA 189
           +   + K NA +R + A
Sbjct: 187 VKNLLRKANAKSRTEMA 203