Pairwise Alignments

Query, 198 a.a., DNA-binding response regulator, LuxR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 216 a.a., two component transcriptional regulator, LuxR family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  104 bits (260), Expect = 1e-27
 Identities = 64/207 (30%), Positives = 111/207 (53%), Gaps = 13/207 (6%)

Query: 3   ILLAEDQAMVRGALAALLTLAGGFTIT-QASDGDEALTLLKQQHFDLLLTDIEMPGRTGL 61
           ++L ED  +VR  L ALL     F+I  +A DG +AL ++++   D++L D+ +P   G 
Sbjct: 5   VVLVEDLDIVREGLKALLGAYPAFSIVGEAPDGIQALKIVEKHMPDIVLMDLTLPLMDGT 64

Query: 62  ELAAWLKEQHSQTKVVVITTFGRAGYIKRAIEAGVGGFLLKDAPSETLVSSIQQVMAGKR 121
           E    +K +  +TKV+ +T   +   I R + AG  G++LK+  S+ LV +++ V++G+R
Sbjct: 65  EAIREIKRRCERTKVLALTAHKKDSLIYRTLSAGADGYVLKNVSSDILVQAMETVLSGRR 124

Query: 122 VIDPELAMMAIGD------------IDPLNDKERRALRFASEGKSTAEIADMLFIAEGTV 169
            I PE++ + I D            +D L+D+E++ L+  +EG     IAD L I+  TV
Sbjct: 125 YISPEISELLIEDFLRHGRRESGSLLDLLSDREKQVLKLVAEGHGNKMIADKLCISHKTV 184

Query: 170 RNYLSEAIAKLNASNRIDAARIAKQKG 196
             + +    KL A +  +    A + G
Sbjct: 185 EKHKANLKRKLGADSTAELVSFAIEHG 211