Pairwise Alignments

Query, 198 a.a., DNA-binding response regulator, LuxR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 225 a.a., two component LuxR family transcriptional regulator (RefSeq) from Shewanella sp. ANA-3

 Score =  114 bits (286), Expect = 1e-30
 Identities = 69/198 (34%), Positives = 114/198 (57%), Gaps = 10/198 (5%)

Query: 1   MKILLAEDQAMVRGALAALLTLAGGFTIT-QASDGDEALTLLKQQHFDLLLTDIEMPGRT 59
           +++ L EDQ +VR  +A+L+ ++    ++ QA +G EAL  L+    D+LL+DI MP   
Sbjct: 18  IRVGLVEDQQLVRQGIASLIAISQHIEVSWQAENGQEALKRLQTDAVDVLLSDIRMPVLD 77

Query: 60  GLELAAWLKEQHSQTKVVVITTFGRAGYIKRAIEAGVGGFLLKDAPSETLVSSIQQVMAG 119
           G+ L   L+   +   V+++TTF  +     +++AG  GFLLKD   + L+ +I+ V  G
Sbjct: 78  GISLLKQLRAAQNSIPVIMLTTFDDSELFLNSLQAGANGFLLKDVSLDKLLEAIETVAQG 137

Query: 120 KRVIDPEL--------AMMAIGDI-DPLNDKERRALRFASEGKSTAEIADMLFIAEGTVR 170
             +I+P +        A    G   D L+++ER  L F + G S  EIA+ +F+AEGTV+
Sbjct: 138 GHLIEPSVLEQMQQSSATAQSGPTHDLLSEREREILGFMAGGFSNKEIANAVFLAEGTVK 197

Query: 171 NYLSEAIAKLNASNRIDA 188
           N++S  +AKL+  +R  A
Sbjct: 198 NHVSTILAKLDCRDRTQA 215