Pairwise Alignments

Query, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1494 a.a., sensory box protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 1724 bits (4465), Expect = 0.0
 Identities = 864/1500 (57%), Positives = 1099/1500 (73%), Gaps = 14/1500 (0%)

Query: 13   ILRLIFSVLC--IISFFTVPSTGLALPLNAANTQLKFEHIRSEDGLNQNTITSLFMDSAG 70
            + R +F  L   I+ F TVP++      +  NT L+F+H  S DGLNQNTIT L+ D AG
Sbjct: 1    MFRALFCALLSLILLFGTVPASAEHGSYHYHNT-LEFQHFSSSDGLNQNTITRLYTDKAG 59

Query: 71   MLWIGTQDGLHSYNGYNFNLFIHSPNDPKSISESYVSDIIQDAEGYLWVGSFSQGINRLD 130
            MLW G+QDGLH +NG  F +F+  P++  S+SE Y++DI+QD EG LWV +++QG+NRLD
Sbjct: 60   MLWAGSQDGLHYFNGQEFGVFLPDPSNTNSLSEGYITDIVQDPEGLLWVSTYTQGLNRLD 119

Query: 131  LKTGTFKRFGVEQGLTDPRVTKLNIVGNTLWIGTQSGLFSFSTRTNRLTKVSLGTSIEPY 190
            L+TG F R+G   GL++ RVT+L ++G++LWIGT+ GLF+   ++ ++  + LG ++ P 
Sbjct: 120  LQTGKFTRYGEADGLSELRVTRLAVIGDSLWIGTERGLFAMQRKSGQIRPIPLGNALTPK 179

Query: 191  ITSLANVDNTYLLAGTKGSGTFAVSANTITRLNIPQDAIAYQVKANSSRAITLALGNQLW 250
            ITSL N+++ YLL GT+  GT+A+S+N I +L +P  +   Q+ +  + A  LA+G +LW
Sbjct: 180  ITSLGNIEDEYLLVGTQAHGTYAISSNNIVKLKLPSTSPVNQIHSIGNVAY-LAIGKELW 238

Query: 251  HYDLATQQGKALWQADKNIPY---IKDFIQTPEGQFWVVGPEAGLIQLEREADKFVATYH 307
             Y++ T   K LWQ++    +   I+DF      + W + P AGLI+LE+  D++ A YH
Sbjct: 239  QYEMDTHSAKILWQSEPQGFFHGDIRDFTLASAEEIWAIAPGAGLIELEK-TDRWRARYH 297

Query: 308  QYDMKRTNSISENNILSLLEDPFGNLWLGASYSGLNKINTRRQYFQHLFEYTNELPLQSN 367
            + D +    IS+NN++S+L DP G LWLG SYSGL+KIN RRQYF HLF+ +  LP Q N
Sbjct: 298  RNDSRSFRDISDNNLMSVLLDPNGVLWLGGSYSGLDKINIRRQYFDHLFDNSVALPKQIN 357

Query: 368  NVRTIYRSQDQALWIGTEGAGLKRLAVNSTTFEHYTSFFAKALGQQTQHLNLILRSIVQD 427
             VR IY++++  +WIGTEGAG+K L  N   ++++T  FA AL    + ++L++R I+QD
Sbjct: 358  MVRAIYQTREGVVWIGTEGAGIKTLKPNEDNYQYHTHLFADALNLVPEAISLVVRDIIQD 417

Query: 428  KQGILWFASNYGLGRLTPNGEFNLLNVADSRDTSAEANYIRSLELDNQNRLWVATSHALY 487
            K+G LWFASNYGLG L  +G F LL+  +           R+L LD  + LWVA    L+
Sbjct: 418  KEGSLWFASNYGLGHLATSGAFRLLHPPEHDGQG------RTLALDKHDTLWVAFDEGLF 471

Query: 488  RKSSVNDEFTPVPLTGIENFHPIQNLLLTLKSDKNILWIGSLNGLVKLDMQTGHGEVFYH 547
                   E    PL            +L L+   + LWIG+L+GL++L+  T   +VF H
Sbjct: 472  YMPISGTELKRFPLDETLGDKLAVRQILGLEFIDDWLWIGTLDGLIRLNPNTNDIQVFTH 531

Query: 548  DPHDKNSIINNRIRDIFVASNGDTWFATHGGISRLPAQALSPIFSDYTREQGLPSDTIYA 607
            DP + +S+ NNRIRDI+ A+NGD W  THGGIS L  +         T  +G+PSDTIYA
Sbjct: 532  DPANSSSLGNNRIRDIYSAANGDVWVGTHGGISILRQEQDGWQIRHLTSNEGVPSDTIYA 591

Query: 608  LLEDDDNHIWFSSNAGIGKLNPHNGKIINFNEQEGLQALEFNGGVKLKDSDGDLWFGGIN 667
            +LED     WFSSNAGI +  P    II FN+ EGLQ  E+NGGVK    DG  WFGGIN
Sbjct: 592  ILEDKQGQFWFSSNAGISRYTPGEDSIITFNKFEGLQEQEYNGGVKFVGQDGYFWFGGIN 651

Query: 668  GINRFNPKTLPNQRSEARVALTAYKIAGQKQTILDLSHPPQIVMNYADQLISFEVTSLDF 727
            GI RF P+ +P  R E  +ALT+Y + G++  ILDL+ PP + MN+ D+++SFEVTSLDF
Sbjct: 652  GITRFLPEQIPKSRQEPPLALTSYSLGGKRTRILDLTTPPSVEMNFEDKVVSFEVTSLDF 711

Query: 728  SYPGKNRFSYFLEGFDNQWHDLPTGNEITFTNIDPGNYLLHVRHSLEYNSKGNYALLVNL 787
            SYPG +RF+Y+L+GFD+QWH      +IT+TN+ PGNYLL VRH L  N  G   L V L
Sbjct: 712  SYPGVDRFAYYLQGFDSQWHSAQAQAQITYTNLSPGNYLLRVRHGLAANPLGYQILTVPL 771

Query: 788  TVKAPFYRTPFAYAFYVLFTLVSMGWALRWRKQKRSQQQEFETSIRASEERLKLALWASG 847
            TV AP+YRTP AY  Y L  +  +GW  R R+ KR Q++EFETSIR SEERLKLALWASG
Sbjct: 772  TVVAPWYRTPPAYVLYTLTLVAILGWFWRERRVKRRQRREFETSIRTSEERLKLALWASG 831

Query: 848  DGMWDWNIQEQQVYRTNTDIAVPQWNGHQLLHDNAHPEDRERFKYELTEHLQGRSPFFEV 907
            DGMWDW+I   QV+RT       Q     +L D  HPED+ R  + + +H+ G   F+E 
Sbjct: 832  DGMWDWDIPSGQVFRTRMHPHTEQQLNGPVLLDRIHPEDKPRVLHAIEQHIDGSRAFYEA 891

Query: 908  EYRIEHSPGKWVWILERGKVVETNAQERPIRMTGTTRNITSRKLIENELVLSSQVLNSMN 967
            EYRIE+ PG W+WI +RGKVVE + Q +P+RM GT ++ITSRK  ENEL LS+QVL SMN
Sbjct: 892  EYRIENKPGHWIWITDRGKVVERDKQGKPVRMVGTHKDITSRKNAENELRLSAQVLASMN 951

Query: 968  EAVVVAGLDYRIRSVNPAFSAITGYSEGQISDKFLIHLAYSRQQRDLFNSIEQQLLRHKH 1027
            EAVVV GLDYRI SVNPAFS ITG++  Q+  K  + L + R+QR ++ +IEQQLLR+KH
Sbjct: 952  EAVVVGGLDYRIASVNPAFSLITGFNPEQVQGKHFLFLTHDRKQRHIYEAIEQQLLRNKH 1011

Query: 1028 WAGEIWIRNKARRAILVWLEINQVIDVKGETSHFVAVFTDITERKKAEEDLRFLASFDTL 1087
            WAGE+ IR + +RAIL+WLEINQV+D K E SHFVAVFTDIT+RKKAEEDLR LAS+D L
Sbjct: 1012 WAGELKIRTRDQRAILIWLEINQVLDSKAEASHFVAVFTDITDRKKAEEDLRLLASYDPL 1071

Query: 1088 TGLPNRTLFQDRLNHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGDLLLKAVAHRL 1147
            T LPNRTLFQDRL+HA++QAHR+ N+VALLFLDLDRFKHINDSMGHHIGDLLLKAVAHRL
Sbjct: 1072 TNLPNRTLFQDRLDHALAQAHRTGNMVALLFLDLDRFKHINDSMGHHIGDLLLKAVAHRL 1131

Query: 1148 QSAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPFLLDDKSLNISTSIG 1207
            Q+ VREGDTVARLGGDEFTIILEGVAKTKAAT+I+EK+++AFQ PF+L+D++LNIS SIG
Sbjct: 1132 QNCVREGDTVARLGGDEFTIILEGVAKTKAATVIAEKLIRAFQTPFILEDQALNISPSIG 1191

Query: 1208 ISLYPNDAKDVDSLIKFADTAMYHAKALGRNNFQFYTNKLNEMATRHMQLETGLKQAISH 1267
            ISLYP DA D  SL+K+ADTAMYHAK+LGRNNFQFYT +LNE A RH+QLE G+KQAI  
Sbjct: 1192 ISLYPMDASDSTSLVKYADTAMYHAKSLGRNNFQFYTLRLNEYAMRHVQLEAGIKQAIVR 1251

Query: 1268 NELSLVYQPKFCLRNGSLTGLEALLRWQHSELGPISPAEFIPLAEETGMINQIGHWVINQ 1327
             ELSLV+QPKF + +GS+TG EALLRW   ELGPISPAEFIPLAEE G+INQ+GHWV+N+
Sbjct: 1252 QELSLVFQPKFRVSDGSITGFEALLRWNSKELGPISPAEFIPLAEEIGIINQLGHWVVNE 1311

Query: 1328 SCQQLAEWNELGFSDISMAVNLSARQLKADIISTIEVALAVSGLPAKALELELTESMIMG 1387
            +C+ +A++   GF D+ +AVNLSARQLKADI+STIEVALAV+GLPAK LELELTESMIM 
Sbjct: 1312 ACRHMAQFAAAGFDDLHVAVNLSARQLKADILSTIEVALAVAGLPAKCLELELTESMIMK 1371

Query: 1388 NPQESVNILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKIDREFVRDITNDPDDAA 1447
            +PQESV +L +LKALG+++AVDDFGTGYSSL+YLKRFP+DTLKIDREFVRDI+ DPDDAA
Sbjct: 1372 SPQESVAVLQRLKALGVSLAVDDFGTGYSSLAYLKRFPLDTLKIDREFVRDISTDPDDAA 1431

Query: 1448 ITSAIIALAHSLELNVVAEGVETQEQLNFLALQGCDQVQGFLLSKPLSAQDCQTLLQQRT 1507
            IT AIIALAHSLELNVVAEGVE + QL  L   GCDQVQGFLL KP++A+D   LL+ RT
Sbjct: 1432 ITGAIIALAHSLELNVVAEGVENEAQLEHLRKHGCDQVQGFLLGKPMAARDAMALLKSRT 1491