Pairwise Alignments

Query, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1036 a.a., sensory box protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  474 bits (1219), Expect = e-137
 Identities = 260/687 (37%), Positives = 392/687 (57%), Gaps = 8/687 (1%)

Query: 823  SQQQEFETSIRASEERLKLALWASGDGMWDWNIQEQQVYRTNT-----DIAVPQW-NGHQ 876
            S Q + E S+RAS E+L L L ++  G WDW++    + R          +V +  + H+
Sbjct: 316  SAQTQSEMSVRASREQLSLVLASAELGFWDWDLNNDVIDRNERCADMLGCSVDEMRHNHR 375

Query: 877  LLHDNAHPEDRERFKYELTEHLQGRSPFFEVEYRIEHSPGKWVWILERGKVVETNAQERP 936
            +  D+ HP+DR      +  HLQG +    VEYRI    G+ +W+ + G+V++ ++  + 
Sbjct: 376  IWMDSIHPDDRMAVLKSIDRHLQGHTDSHNVEYRIIRKNGETLWVRDTGRVMQKDSSGKA 435

Query: 937  IRMTGTTRNITSRKLIENELVLSSQVLNSMNEAVVVAGLDYRIRSVNPAFSAITGYSEGQ 996
            IRM G   +IT  +  + ++ L++ V N+ +EA+ V      I +VN AF+ ITGYS  +
Sbjct: 436  IRMCGVHLDITQVRHNQEQMELAASVYNNSSEAMSVMDHKGNIITVNAAFADITGYSPKE 495

Query: 997  ISDKFLIHLAYSRQQRDLFNSIEQQLLRHKHWAGEIWIRNKARRAILVWLEINQVIDVKG 1056
            +    +      R +   ++ + Q +     W GE+W ++K  +  L+WL +N + D   
Sbjct: 496  VLGHHISQFYCPRNKPAFYDEVNQAIKETGRWQGEMWQQHKNGKEYLIWLTVNTIYDAYQ 555

Query: 1057 ETSHFVAVFTDITERKKAEEDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNIVAL 1116
                 VA+F+DITE+K  E+ +   A++D LT LPNR +  D L+  IS A R N   AL
Sbjct: 556  RPHRRVALFSDITEKKAQEQLIWQQANYDPLTKLPNRRMLLDYLDREISLASRQNVRFAL 615

Query: 1117 LFLDLDRFKHINDSMGHHIGDLLLKAVAHRLQSAVREGDTVARLGGDEFTIILEGVAKTK 1176
            LFLDLD FK +ND++GH +GD LL   A R+++ +R+ D VARLGGDEFT+++  +    
Sbjct: 616  LFLDLDFFKEVNDTLGHDMGDKLLIECADRIKACIRDSDVVARLGGDEFTVLIRDIHDVG 675

Query: 1177 AATLISEKVLKAFQAPFLLDDKSLNISTSIGISLYPNDAKDVDSLIKFADTAMYHAKALG 1236
                 +  +LKA   PF L   S  IS SIGI+L+P DA   ++L+K AD AMY AK  G
Sbjct: 676  GVERAASNILKAIAEPFQLGPDSAYISVSIGITLFPEDASTREALLKNADQAMYAAKEQG 735

Query: 1237 RNNFQFYTNKLNEMATRHMQLETGLKQAISHNELSLVYQPKFCLRNGSLTGLEALLRWQH 1296
            RN F ++T  + E A   M+L   L+ AI H + +LVYQP   L++G +   EALLRW H
Sbjct: 736  RNRFNYFTPSMQEQAKYRMRLIQDLRIAIEHQQFNLVYQPIVHLQSGKVHKAEALLRWHH 795

Query: 1297 SELGPISPAEFIPLAEETGMINQIGHWVINQSCQQLAEWNELGFSDISMAVNLSARQLK- 1355
             E G ISP EFIP+AE+TG+I +IG WV   + +Q  +W+    + I ++VN S  Q + 
Sbjct: 796  PERGYISPTEFIPVAEDTGLIMEIGSWVFEHAARQCRDWHHEFGTTIQLSVNKSPVQFRD 855

Query: 1356 -ADIISTIEVALAVSGLPAKALELELTESMIMGNPQESVNILSKLKALGLTIAVDDFGTG 1414
              +        L    L    + +E+TE +++         L   +  G+ +++DDFGTG
Sbjct: 856  EGENFERWVALLEELELTHGGICIEITEGLLLDASSGVAEKLLTYRDAGIQVSLDDFGTG 915

Query: 1415 YSSLSYLKRFPIDTLKIDREFVRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQEQL 1474
            YSSL+YLK+F ID LKID+ F R++ ND  D  +  AII +A  L + V+AEGVET +Q 
Sbjct: 916  YSSLAYLKKFDIDYLKIDQSFTRNLENDASDRTLCEAIIVMAQKLGMKVIAEGVETAKQQ 975

Query: 1475 NFLALQGCDQVQGFLLSKPLSAQDCQT 1501
              L   GCD  QG+L S P+S ++ +T
Sbjct: 976  EILKAMGCDYAQGYLYSAPVSREEFET 1002