Pairwise Alignments

Query, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 751 a.a., sensory box protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  442 bits (1136), Expect = e-128
 Identities = 242/588 (41%), Positives = 356/588 (60%), Gaps = 4/588 (0%)

Query: 919  VWILERGKVVETNAQERPIRMTGTTRNITSRKLIENELVLSSQVLNSMNEAVVVAGLDYR 978
            +W LE  K    +   R + + GTTR+I   K  E +L L+S+V  +  E V++   +  
Sbjct: 164  IW-LETIKAPMYDMDGRLLGVIGTTRDIARYKAAEEQLFLTSKVFENAIEGVMITDSNGI 222

Query: 979  IRSVNPAFSAITGYSEGQISDKFLIHLAYSRQQRDLFNSIEQQLLRHKHWAGEIWIRNKA 1038
            I  +N AF  ITGYS  ++  K    L   R +RD F ++ + L    HW GEIW R K 
Sbjct: 223  ITEINGAFETITGYSRDEVIGKTPKLLNSGRHERDFFENLWRALKTQGHWHGEIWNRRKN 282

Query: 1039 RRAILVWLEINQVIDVKGETSHFVAVFTDITERKKAEEDLRFLASFDTLTGLPNRTLFQD 1098
                     I+ V    G+   FVAVF+DI+  K+ E ++  LA  D LT LPNR+    
Sbjct: 283  GTLFAEQTSISAVYGEDGQVRCFVAVFSDISLLKQTEAEVAQLAWHDPLTRLPNRSKLTT 342

Query: 1099 RLNHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGDLLLKAVAHRLQSAVREGDTVA 1158
                 I  A      +ALL +D+D FKHINDS GH  GD +L +++ RL + +   DT+A
Sbjct: 343  ISQQQIKLAANRKTRLALLLIDVDLFKHINDSFGHLAGDKVLLSLSERLAALLGAEDTLA 402

Query: 1159 RLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPF-LLDDKSLNISTSIGISLYPNDAKD 1217
            R+GGDEF ++L  V +     +I   + +AF   F   + +S+ +S SIGI++YP+D  +
Sbjct: 403  RIGGDEF-VLLTQVRRRDDIPVILSAIQRAFDTSFDTSEGESVRLSASIGIAVYPDDGDN 461

Query: 1218 VDSLIKFADTAMYHAKALGRNNFQFYTNKLNEMATRHMQLETGLKQAISHNELSLVYQPK 1277
             D+L+K AD AMY AK  GRN   FYT ++ + + + ++L+T L+ A+ ++ LSLVYQPK
Sbjct: 462  PDTLLKNADAAMYRAKQQGRNRHAFYTEQMTQSSMQQLRLQTALRGAVKNSALSLVYQPK 521

Query: 1278 FCLRNGSLTGLEALLRWQHSELGPISPAEFIPLAEETGMINQIGHWVINQSCQQLAEWNE 1337
              LR   L G+EAL RW   ELG +SPAEFIP+AE  G++ +IG WV+ ++C+Q   W +
Sbjct: 522  INLRTRKLIGVEALCRWTDHELGVVSPAEFIPVAESIGLMPEIGLWVLKEACRQARIWRD 581

Query: 1338 LGFSDISMAVNLSARQLKAD-IISTIEVALAVSGLPAKALELELTESMIMGNPQESVNIL 1396
             G +   MAVN+S  QL  D    ++   L  +GL   ALELE+TES+++ NP  +++ +
Sbjct: 582  QGLNPGRMAVNVSGSQLTGDNFADSVARVLTQTGLSPDALELEITESVVLDNPASAIDTM 641

Query: 1397 SKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKIDREFVRDITNDPDDAAITSAIIALA 1456
             KL+ +G+++A+DDFGTGYSSLSYL++ P++ LKID+ FVR++  D D  AI  AIIA+ 
Sbjct: 642  DKLRGMGVSLALDDFGTGYSSLSYLRKLPLNKLKIDQSFVRELPTDQDSGAIAMAIIAMG 701

Query: 1457 HSLELNVVAEGVETQEQLNFLALQGCDQVQGFLLSKPLSAQDCQTLLQ 1504
             +L+L V+AEGVE + Q  FL   GC + QG+L ++PL A + + LLQ
Sbjct: 702  EALKLGVIAEGVENETQAEFLLRLGCTEAQGYLFARPLLASELKQLLQ 749