Pairwise Alignments
Query, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1
Subject, 1431 a.a., sensory box protein (RefSeq) from Shewanella amazonensis SB2B
Score = 561 bits (1447), Expect = e-163
Identities = 441/1464 (30%), Positives = 707/1464 (48%), Gaps = 149/1464 (10%)
Query: 99 KSISESYVSDIIQDAEGYLWVGSFSQGINRLDLKTGTFKRFGVEQ--GLTDPRVTKLNIV 156
+ +S++ V+ +++D GY+W+G+ + G+NR D FK++ E L+ + L I
Sbjct: 47 QGLSQNTVTSVVEDKNGYIWLGTLN-GLNRFD--GSEFKKYYSEDFSNLSSAFIHSLEIF 103
Query: 157 GNTLWIGTQSGLFSFSTRTNRLTKVSLGTSIEPYITSLANVDNTYLLAGTKGSGTFAVSA 216
L IGT + L + T +L + + IT L +N LL S+
Sbjct: 104 DEKLIIGTDNSLLAMDPDTEKLKLI---LESKEAITFLKKENNNLLLG----------SS 150
Query: 217 NTITRLNIPQDAIAYQVKANSSRAITLALGNQLWHYDLATQQGKALW--QADKNIPYI-K 273
N+I L+ + I +++K+N + + N HY + G L ++K++ YI +
Sbjct: 151 NSIKVLDSDYNII-FEIKSNKIDFVKQIVKNDE-HYLIRNHDGTILKTKNSEKDVEYITR 208
Query: 274 DFIQTP-EGQFWVVGPEAGLIQLEREADKFVATYHQYD------------MKRTNSISEN 320
+ I +G V+ G+ + R + + YD K +I+EN
Sbjct: 209 ESISIGFDGVKLVIDKPDGIYEYTRNNELIKISNTVYDNVTYIESGKISLKKNIVTITEN 268
Query: 321 NI---------LSLLEDPFGNLWLGASYSGLNKINTRRQYFQHLFEYTNELPL---QSNN 368
I SLL + G + +N F ++ ++ N + Q NN
Sbjct: 269 KIEISGEIDSTFSLLSPLIFRVKNGIIIASMNN------GFLYIQDHKNIVKTGSAQKNN 322
Query: 369 VRTIYRSQDQALWIGTEGAGLKRLAVNSTTFEHYTSFFAKALGQ-QTQHLNLILRSIVQD 427
+ ++ L++ E A +K Y+ + +G+ T+ + SI+ D
Sbjct: 323 NIWFIENHNENLFVADETANIKI----------YSKEQLELVGEVDTKAIGFKAISIIND 372
Query: 428 KQGILWFASNYGLGRLTPNGEFNLLNVADSRDTSAEANYIRSLELDNQNRLWVATSHALY 487
+ L + S YG+ + NL N + + A + E N N++++ T+
Sbjct: 373 DE--LIYCSTYGIFK------HNLSNKTQIKISDRIAYALAYNE--NSNKIYIGTNDLKL 422
Query: 488 RKSSVNDEFTPVPLTGIENFHPIQNLLLTLKSDKNILWIGSLNGLVKLDMQTGHGEVFYH 547
+N F + L PI L ++ K L+I GL + + E
Sbjct: 423 VSIDLNS-FEEIILNSSNL--PIFQLKISPKGGD--LYISHQGGLSVIR----NNEAAIK 473
Query: 548 DPHDKNSIINNRIRDIFVASNGDTWFATHGGISRLPAQALSPIFSDYTREQGLPSDTIYA 607
D ++ + D ++A AT+ GI + I S+ T +Y+
Sbjct: 474 DIISEHIVYGIEFFDTYIA------VATNSGILK------HEISSNKTETLVNMDKPVYS 521
Query: 608 LLEDDD-------NHIWFSSNAGIGKLNPHNGKIINFNEQEGLQALEFNGGVKLKDSDGD 660
L D N I ++ + L NG +N Q F GV L
Sbjct: 522 LGAYDGWIFGSSINSIVVAAQERVYTLYSSNGAQAEYNNQS---FGTFANGVIL------ 572
Query: 661 LWFGGINGINRFNPKTLPNQRSEARVALTAY--------KIAGQKQTIL--DLSHPPQIV 710
GGI G++ FN K N + L K I+ ++ I
Sbjct: 573 ---GGIQGLSIFNKKDFQNFMMKVPERLNTNLTGLYLFNKEVKNDSEIMKKSINSSESIT 629
Query: 711 MNYADQLISFEVTSLDFSYPGKNRFSYFLEGFDNQWHDLPTGNEITFTNIDPGNYLLHVR 770
+ Y+D + + +S +S + Y L+G ++W T+TN+ G Y V
Sbjct: 630 LKYSDYPFAIQFSSPLYSNSNVTHY-YRLKGLSDEWIAAQKTKIATYTNLSAGKYNFEVY 688
Query: 771 HSLEYNSKGNYALLVNLTVKAPFYRTPFAYAFYVLFTLVSMGWALRWRKQKRSQQQEFET 830
+ V++ V P++ + A Y L L+ ++ ++R Q++
Sbjct: 689 AKDNLSQLSGPIKSVSVIVTPPWWMSLEAKLAYALIFLLITSGIIKAALRRREVQRQ--- 745
Query: 831 SIRASEERLKLALWASGDGMWDWNIQEQQVYRTNT--DIAVPQWNGHQLLHD----NAHP 884
I SEERLKL+LW SGD MWDW+I+ ++YR+N + P+ +GH+ D N HP
Sbjct: 746 -IAISEERLKLSLWGSGDEMWDWDIETGKIYRSNIWGSLEFPK-DGHRSGKDDEESNIHP 803
Query: 885 EDRERFKYELTEHLQGRSPFFEVEYRIEHSPGKWVWILERGKVVETNAQERPIRMTGTTR 944
+D+ER + L H G + FE YR++ G WVWIL+R K+VE + E +RMTGT +
Sbjct: 804 QDQERVREALNRHFYGETDHFEAAYRVKGKDGHWVWILDRAKIVERDDSENALRMTGTIK 863
Query: 945 NITSRKLIENELVLSSQVLNSMNEAVVVAGLDYRIRSVNPAFSAITGYSEGQISDKFLIH 1004
NI + K E +L L + + +++E + + ++R VN A I + L
Sbjct: 864 NINNFKQAEEQLRLFERAIENISEGMFILDHEFRFVEVNEACCDICLMDKDSFIGTQLQF 923
Query: 1005 LAYSRQQRDLFNSIEQQLLRHK-HWAGEIWIRNKARRAILVWLEINQVIDVKGETSHFVA 1063
Y D ++ + +LR + W+ E+ R L+ L ++ + D +G SHFV
Sbjct: 924 SCYP----DAYSEQVRIILRQQGRWSAEVESRRGDNSTFLMELTVDAIYDEQGTLSHFVG 979
Query: 1064 VFTDITERKKAEEDLRFLASFDTLTGLPNRTLFQDRLNHAISQ-AHRSNNIVALLFLDLD 1122
VF+DI+ RK+ EE+LR L + D LTGLPNR+ Q LN+ + + H + L+ LDLD
Sbjct: 980 VFSDISRRKQQEEELRKLTNNDLLTGLPNRSNLQVSLNNLVKKDTHHT-----LMVLDLD 1034
Query: 1123 RFKHINDSMGHHIGDLLLKAVAHRLQSAVREGDTVARLGGDEFTIILEGVAKTKAATLIS 1182
FK INDS+GH +GD LL+ V+ R+ +A+ ++ RLGGDEF ++L+ +A I+
Sbjct: 1035 NFKKINDSLGHQVGDELLQLVSRRMSAALPGHTSLYRLGGDEFAVLLDKDPDIGSAAAIA 1094
Query: 1183 EKVLKAFQAPFLLDDKSLNISTSIGISLYPNDAKDVDSLIKFADTAMYHAKALGRNNFQF 1242
+ ++ AF APF L + L + SIGI LYP D ++ +L++ AD AMYHAK+ G N +QF
Sbjct: 1095 KGLVDAFVAPFELAGEKLVVGVSIGIVLYPEDEQNEQALLRKADIAMYHAKSAGGNRYQF 1154
Query: 1243 YTNKLNEMATRHMQLETGLKQAISHNELSLVYQPKFCLRNGSLTGLEALLRWQHSELGPI 1302
Y+ LN A R +++E ++ + + + YQPK LRN + G+EAL+R H G I
Sbjct: 1155 YSESLNRNALRQLEVENLIRDGLRDDLFEVYYQPKVDLRNSRMAGMEALVRLNHPTQGLI 1214
Query: 1303 SPAEFIPLAEETGMINQIGHWVINQSCQQLAEWNELGFSDISMAVNLSARQLK-ADIIST 1361
P+EFIPLAEETG+I +IG V+ ++C W E G D +AVNLS+RQ D+
Sbjct: 1215 PPSEFIPLAEETGLIVEIGDLVMRKACFAAQRWREQGLFDGRVAVNLSSRQFALTDLQQR 1274
Query: 1362 IEVALAVSGLPAKALELELTESMIMGNPQESVNILSKLKALGLTIAVDDFGTGYSSLSYL 1421
IE L ++ LPA LELE+TE ++ P++++ ++ +L +G+++A+DDFGTGYSSLSYL
Sbjct: 1275 IESILRLTKLPAANLELEITEGTVIKQPEKAIKVMQQLAKMGVSLALDDFGTGYSSLSYL 1334
Query: 1422 KRFPIDTLKIDREFVRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQEQLNFLALQG 1481
KRFPI TLKID+ FV DI D + +II +AH++ L VV EGVE QLN L
Sbjct: 1335 KRFPIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMGLTVVGEGVEVPSQLNILRALK 1394
Query: 1482 CDQVQGFLLSKPLSAQDCQTLLQQ 1505
C++VQG++ SK + + TLL+Q
Sbjct: 1395 CEEVQGYIYSKAVPEAEFTTLLKQ 1418
Score = 28.1 bits (61), Expect = 0.007
Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 9/137 (6%)
Query: 594 YTREQGLPSDTIYALLEDDDNHIWFSSNAGIGKLNPHNGKIINFNEQEGLQALEFNGGVK 653
++ QGL +T+ +++ED + +IW + G+ + + K + L + +
Sbjct: 43 FSTVQGLSQNTVTSVVEDKNGYIWLGTLNGLNRFDGSEFKKYYSEDFSNLSSAFIH---S 99
Query: 654 LKDSDGDLWFGGINGINRFNPKTLPNQR-SEARVALTAYKIAGQKQTILDLSHPPQIVMN 712
L+ D L G N + +P T + E++ A+T K ++ L L I +
Sbjct: 100 LEIFDEKLIIGTDNSLLAMDPDTEKLKLILESKEAITFLK---KENNNLLLGSSNSIKVL 156
Query: 713 YADQLISFEVTS--LDF 727
+D I FE+ S +DF
Sbjct: 157 DSDYNIIFEIKSNKIDF 173