Pairwise Alignments

Query, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1491 a.a., sensory box protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  521 bits (1341), Expect = e-151
 Identities = 427/1505 (28%), Positives = 715/1505 (47%), Gaps = 114/1505 (7%)

Query: 52   SEDGLNQNTITSLFMDSAGMLWIGTQDGLHSYNGYNFNLFIHSPNDPKSISESYVSDIIQ 111
            S DGL+   I ++  DS G +W+ T+DGL   +       + +      +++SY+ D++ 
Sbjct: 35   SRDGLSNGMINAIAFDSYGFVWVATEDGLFRISK-TVARRVDTQQGENRLNDSYIMDVVA 93

Query: 112  DAEGYLWVGSFSQGINRLDLKTGTFKRFGVEQ--------GLTDPRVTKLNIVGNTLWIG 163
              + YL V S S  + R  + + TF+  G E         G+ D  V   +   + + + 
Sbjct: 94   LGQEYLLV-SVSDSLYRYHIPSDTFEEIGSESLFPEYEGGGIIDRTVVDQH---SLMLLN 149

Query: 164  TQSGLFSFSTRTNRLTKV-SLGTSIEPYITSLANVDNTYLLAGTKGSGTFAVSANTITRL 222
            ++  +      + +L KV  L    +     L  + +  L+ G K       SA     +
Sbjct: 150  SKGQILKLDHHSWQLEKVIQLQQDPDLLWDKLLYLPSGQLIIG-KSDHLEIRSAQGEKLV 208

Query: 223  NIPQDAIAYQVKA---NSSRAITLALGNQLWHYDLATQQGKALWQADKNIP-YIKDFIQT 278
            ++P    + Q K    + +  + L     L+     TQQ   + Q    +P Y+    + 
Sbjct: 209  DLPWVEASGQAKRLFRDRAGRVWLTASEGLFEVLPDTQQILPVPQ----VPFYVTAINED 264

Query: 279  PEGQFWVVGPEAGL--IQLEREADKFVATYHQYDMKRTNSISENNILSLLEDPFGNLWLG 336
             +G  W+      L    +++  +KF +   Q+        + +++  +  D  G +WLG
Sbjct: 265  GKGNLWMASSSGALKWSPVDQTLEKFDSDLRQF-------ANIDSVQDVAIDNQGLIWLG 317

Query: 337  ASYSGLNKINTRRQYFQHLFEYTNELPLQSNNVRTIYRSQDQALWIGTEGAGLKRL---- 392
             +  GL     +  + +  F       L +  + +I+   D+  W+GT+ AG+  +    
Sbjct: 318  GAGEGLVLAADKPSFLRGTFTDQPPYSLGNQMIWSIFTEGDR-YWLGTD-AGVVSVQDGV 375

Query: 393  --AVNSTTFEHYTSFFAKALGQQTQHLNLILRSIVQDKQGILWFASNYGLGRLTPNGEFN 450
              +V ST  E   +    A+   +    L+  +            +   L   T N    
Sbjct: 376  AGSVLSTPEEFEPNDTVYAITSLSSEYLLLATT------------NGLFLQHKTTNLTKR 423

Query: 451  LLNVADSRDTSAEANYIRSLELDN--QNRLWVATSHAL-YRKSSVND--EFTPVPLTGIE 505
                +   D S +  +I  +  D     RLW  TS  L Y +  + D  E+  V  +G  
Sbjct: 424  FHEWSSGSD-SLKRKWIYQVYKDPGIPGRLWFLTSTGLFYWEPGLFDPQEYAIVSRSGER 482

Query: 506  NFHPIQNLLLTLKSDKNILWIGSLNGLVKLDMQTGHGEVFYHDPH----DKNSIINNRIR 561
            +   I ++L   +     LW+G            G  E  Y D      DK  + + +  
Sbjct: 483  HQPAIYSML---RGADGKLWLG------------GPDEFGYLDADGYFIDKRELFSGKRG 527

Query: 562  DIFVA-----SNGDTWFATHGGISRLPAQALSPIFSDYTREQGLPSDTIYALLEDDDNHI 616
            D+ V      + G  W  T      +  Q  +   +       L   T Y L++  D  +
Sbjct: 528  DLLVGHILEIAPGKLWLGT-SLFGVVEYQVNTDTLTSLQDRWKLSCYTTYGLIDTPDYRV 586

Query: 617  WFSSNAGIGKLNPHNG--KIINFNEQEGLQALEFNGGVKLKDSDGDLWFGGINGINRFNP 674
                 + + +   H G  ++  F  ++G+   EFN G      D  L+ G  NG+   + 
Sbjct: 587  ILCPRSLVRE---HKGTSEVQVFTVEDGVVNNEFNDGAYAYREDKGLFLGSPNGVRLLDV 643

Query: 675  KTLPNQRSEARVALTAYKIAGQKQTILDLSHPPQIVMNYADQLISFEVTSLDFSYPGKNR 734
              L N+ ++ RV L +  +     T   L      ++    ++IS ++TS DF      R
Sbjct: 644  NGLKNRITDERVFLESVTVFYDSHTEKSLVPSDLTMVEPGARMISLQLTSNDFLDDSPIR 703

Query: 735  FSYFL----EGFDNQWHDLPTGNEITFTNIDPGNYLLHVRHSLEYNSKGNYALLVNLTVK 790
              Y L    +  + ++  L    ++  + +D G   L +  SL      +   +  L V+
Sbjct: 704  LKYRLGKQGQLVEPKYLLLDGQPQLNLSGLDAGKLELEIL-SLRNQIWNDTPYIHRLHVQ 762

Query: 791  APFYRTP-FAYAFYVLFTLVSMGWALRWRKQKRSQQQEFETSIRASEERLKLALWASGDG 849
              ++ T  F ++  V+  L+++   L  R ++  + +   T++  SE+RL+ +L  S   
Sbjct: 763  QYWWETALFKWSLIVILMLLTLAIILI-RHRQVERFRHMNTALLESEDRLRQSLRGSDSD 821

Query: 850  MWDWNIQEQQVYRTNTD--IAVPQWNGHQLLHDN-----AHPEDRERFKYELTEHLQGRS 902
            +W W  ++   Y  N +  ++V Q    Q+L  N      HP+DR+R        + G  
Sbjct: 822  LWMWTRKDNAFYMDNRNGVLSVEQ----QVLKVNFEEFPIHPDDRDRVVSHWLAVINGEI 877

Query: 903  PFFEVEYRIEHSPGKWVWILERGKVVETNAQERPI-RMTGTTRNITSRKLIENELVLSSQ 961
              FE EYR +   G W W+  RG+  + N +   + +++G   +IT  KL++NE+ L +Q
Sbjct: 878  ERFEAEYRFQRRTGTWGWLRVRGRPSQLNKETGEVEKISGIYSDITQHKLLQNEVDLLAQ 937

Query: 962  VLNSMNEAVVVAGLDYRIRSVNPAFSAITGYSEGQISD-KFLIHLAYSRQQRDLFNSIEQ 1020
               + +E V++   D +I+  N A  +I G    +++  KF+  L      R   + I  
Sbjct: 938  AFENTSEGVLILDADEQIKVANRAAQSILGAGMAELAGRKFIALLTEHGTNR---SEIAT 994

Query: 1021 QLLRHKHWAGEIWIRNKARRAILVWLEINQVIDVKGETSHFVAVFTDITERKKAEEDLRF 1080
             L     W GE  +R  + +   VWL ++ ++ ++G+  H+V VF+DITERK++E DLR 
Sbjct: 995  LLANGMSWTGERELRIGSGQVCPVWLNVSVMLGLQGKVQHYVVVFSDITERKRSEADLRR 1054

Query: 1081 LASFDTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGDLLL 1140
            LA++D LTGLPNR+LF  RLN AI +A ++   +AL+FLDLDRFKH+NDS GH +GD LL
Sbjct: 1055 LANYDVLTGLPNRSLFAARLNQAIHKATQNEEKLALMFLDLDRFKHVNDSFGHGMGDALL 1114

Query: 1141 KAVAHRLQSAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPFLLDDKSL 1200
               A RLQS +    T+ R GGDEF +++ G A+      ++  +L   + PF L  +  
Sbjct: 1115 VEAAARLQSCIDPEYTLCRFGGDEFVVLIHG-AEVDTLNHLANTILGQIETPFKLFGREF 1173

Query: 1201 NISTSIGISLYPNDAKDVDSLIKFADTAMYHAKALGRNNFQFYTNKLNEMATRHMQLETG 1260
             ISTSIGIS++P+DA+  ++LIK AD AMYHAK  GR NFQ+Y+ + N  A  H++LE  
Sbjct: 1174 YISTSIGISIWPDDARQPEALIKNADLAMYHAKEEGRGNFQYYSQERNAEALYHLRLEAD 1233

Query: 1261 LKQAISHNELSLVYQPKFCLR-NGSLTGLEALLRWQHSELGPISPAEFIPLAEETGMINQ 1319
            L++A+   E  L YQP+  +  +  + G+EALLRWQH + G I    FI +AE  G++  
Sbjct: 1234 LRKALERQEFCLHYQPQVDVNDDNQVIGMEALLRWQHPKDGYIRTDIFIKVAEACGLVID 1293

Query: 1320 IGHWVINQSCQQLAEWNELGFSDISMAVNLSARQLK-ADIISTIEVALAVSGLPAKALEL 1378
            I  WV+ Q+C   A W+        ++VN+SA   +  D I  +   L  + +P + L L
Sbjct: 1294 IDKWVLRQACLDGARWSRKLKRPFKISVNISAVHFRQPDFIDHLRRTLEETCIPVENLAL 1353

Query: 1379 ELTESMIMGNPQESVNILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKIDREFVRD 1438
            E+TE ++M     + + L  L+ +G+ +A+DDFGTGYSSL+YL+ F ++ LKIDR F+ D
Sbjct: 1354 EITEGVLMKELHIARDHLRLLREMGVQVAIDDFGTGYSSLAYLRHFDVNLLKIDRSFLID 1413

Query: 1439 ITNDPDDAAITSAIIALAHSLELNVVAEGVETQEQLNFLALQGCDQVQGFLLSKPLSAQD 1498
            I ++  D AI S+II LA +L+L VVAEGVET+EQLN +  +GC  +QG+  +KP++  D
Sbjct: 1414 IADNQADQAIVSSIIELARNLKLKVVAEGVETREQLNQVLSRGCHVIQGYYFAKPMARDD 1473

Query: 1499 CQTLL 1503
                L
Sbjct: 1474 MDAYL 1478