Pairwise Alignments

Query, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 855 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

 Score =  444 bits (1142), Expect = e-128
 Identities = 242/590 (41%), Positives = 352/590 (59%), Gaps = 3/590 (0%)

Query: 916  GKWVWILERGKVVETNAQERPIRMTGTTRNITSRKLIENELVLSSQVLNSMNEAVVVAGL 975
            G  +WI E  + V     E  +   GT  +IT+++  +  + L  +V  S+ E +V+   
Sbjct: 248  GHTIWITENARCVRGPDNE-VLYYEGTVEDITAQRQSQETMRLLGKVFTSIAEGIVLLER 306

Query: 976  DYRIRSVNPAFSAITGYSEGQISDKFLIHLAYSRQQRDLFNSIEQQLLRHKHWAGEIWIR 1035
            D  +R+VNPAF A+TG     +  +     A    + D   ++  ++ R   W GEIW  
Sbjct: 307  DLTVRTVNPAFEAMTGLLRQDMEGRPARLFASGLHENDFLATVAAEVDRAGLWRGEIWGE 366

Query: 1036 NKARRAILVWLEINQVIDVKGETSHFVAVFTDITERKKAEEDLRFLASFDTLTGLPNRTL 1095
             +        + +  V    GET+H+VA  TDIT+RK+ EE +RF A+FD LT LPNR L
Sbjct: 367  RREGPPYSGEMTVTAVRTRAGETTHYVAAITDITKRKRDEEHIRFQANFDMLTHLPNRHL 426

Query: 1096 FQDRLNHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGDLLLKAVAHRLQSAVREGD 1155
              DRL  A+ QA R+   V ++FLDLDRFK INDS GH  GD +LK  A RL++ VR  D
Sbjct: 427  IMDRLEQAMHQAQRTGRQVCVMFLDLDRFKQINDSYGHSAGDEVLKLTARRLRNCVRISD 486

Query: 1156 TVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPFLLDDKSLNISTSIGISLYPNDA 1215
            +V RLGGDEF +IL  V    A   I+EK+L +   PF +    +    S+GI+ +P+  
Sbjct: 487  SVGRLGGDEFIVILSNVEDQHAGAYIAEKILYSLSEPFPIGGTEVFCIPSVGITYFPDHG 546

Query: 1216 KDVDSLIKFADTAMYHAKALGRNNFQFYTNKLNEMATRHMQLETGLKQAISHNELSLVYQ 1275
            +    L++ AD AMYHAK  G   +  +T  +   +   + +E+ L+ A++ +E  L +Q
Sbjct: 547  ETAPDLLRNADVAMYHAKQGGERRYAIFTPDMARRSLALLTMESDLRHALARDEFELHFQ 606

Query: 1276 PKFCLRNGSLTGLEALLRWQHSELGPISPAEFIPLAEETGMINQIGHWVINQSCQQLAEW 1335
            PK    + +L G EAL+RW+H E G I+P +FIPLAEE+G+I  IG W + ++C ++  W
Sbjct: 607  PK-VRADLTLIGAEALIRWRHPEKGLINPGDFIPLAEESGLILPIGRWTLREACDRVMSW 665

Query: 1336 NELGFSDISMAVNLSARQLK-ADIISTIEVALAVSGLPAKALELELTESMIMGNPQESVN 1394
               G +  S++VN+S RQ +   ++ T+   L  +GL  +AL+LE+TE+++ G+ + +V 
Sbjct: 666  RAEGLTIPSVSVNVSPRQFQDQTLVETVRQILVETGLEPEALDLEITETVMTGDVEHAVG 725

Query: 1395 ILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKIDREFVRDITNDPDDAAITSAIIA 1454
             L  LK LG+T+++DDFGTGYSSL+YLK FPIDTLKID+ FVRD+ +   DAAI S IIA
Sbjct: 726  TLRALKDLGVTLSIDDFGTGYSSLNYLKTFPIDTLKIDQTFVRDVLHSGKDAAIVSTIIA 785

Query: 1455 LAHSLELNVVAEGVETQEQLNFLALQGCDQVQGFLLSKPLSAQDCQTLLQ 1504
            LA +L  +VVAEGVE  EQ  FL  + C   QGFL S+PL   +  T L+
Sbjct: 786  LARNLGFSVVAEGVEEIEQAEFLGSRDCQNFQGFLYSRPLPPAEFTTFLR 835