Pairwise Alignments

Query, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 640 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  429 bits (1103), Expect = e-124
 Identities = 220/452 (48%), Positives = 304/452 (67%), Gaps = 1/452 (0%)

Query: 1056 GETSHFVAVFTDITERKKAEEDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNIVA 1115
            G  +    +F DIT RK AEE + +LA  D LT LPNR L +DR   A  QA RS N VA
Sbjct: 189  GSINGIQGIFWDITARKSAEEQIEYLAHHDPLTDLPNRVLLRDRFLQAQGQAARSANRVA 248

Query: 1116 LLFLDLDRFKHINDSMGHHIGDLLLKAVAHRLQSAVREGDTVARLGGDEFTIILEGVAKT 1175
            +LFLDLD FK +ND++GH IGD LL+AVA RL+  VRE DT++R GGDEF I+L  +A  
Sbjct: 249  ILFLDLDHFKLVNDTLGHPIGDRLLQAVAERLRRGVRETDTISRQGGDEFVIVLPELADP 308

Query: 1176 KAATLISEKVLKAFQAPFLLDDKSLNISTSIGISLYPNDAKDVDSLIKFADTAMYHAKAL 1235
            ++A  I+ K+++    P  ++   LN++ S+GI+LYP+D +D D+L+K ADTAMY AK  
Sbjct: 309  ESAGSIAGKLMEQMHEPVRVNGHRLNVTFSLGIALYPDDGEDFDTLMKKADTAMYSAKEA 368

Query: 1236 GRNNFQFYTNKLNEMATRHMQLETGLKQAISHNELSLVYQPKFCLRNGSLTGLEALLRWQ 1295
            GRN  +F+T  +N  A   ++L+  L++A+   EL L YQP+F L +G + G EALLRW+
Sbjct: 369  GRNTLRFFTAAMNVEAAARLKLQNRLQRALEKEELVLYYQPQFDLASGRILGTEALLRWR 428

Query: 1296 HSELGPISPAEFIPLAEETGMINQIGHWVINQSCQQLAEWNELGFSDISMAVNLSARQL- 1354
              E G + P EFIP+AE+TG+I  IG WVI ++C++L  W+E G +D++MAVNLS  Q  
Sbjct: 429  DPERGLVPPGEFIPVAEDTGLIGPIGEWVIGEACRELRRWHEAGATDLTMAVNLSPVQFR 488

Query: 1355 KADIISTIEVALAVSGLPAKALELELTESMIMGNPQESVNILSKLKALGLTIAVDDFGTG 1414
            ++ ++     AL  + LPA+ LE ELTES+++      +  L+ LK LG+ +++DDFGTG
Sbjct: 489  RSRLVEIAARALQENRLPAECLEFELTESLLIREDAAILETLTALKGLGVKLSIDDFGTG 548

Query: 1415 YSSLSYLKRFPIDTLKIDREFVRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQEQL 1474
            YSSL+YLKRF +D LKID+ F+R++ ++PDD AI SA+I +A  L L  VAEGVE  EQ 
Sbjct: 549  YSSLAYLKRFNVDKLKIDQSFIRELCSNPDDEAIVSAVITMARQLRLRTVAEGVENAEQA 608

Query: 1475 NFLALQGCDQVQGFLLSKPLSAQDCQTLLQQR 1506
              L    CD+VQGFL  +P+ A D Q LL  R
Sbjct: 609  TMLRRFDCDEVQGFLFGRPMPAADFQALLGHR 640