Pairwise Alignments

Query, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 651 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  477 bits (1227), Expect = e-138
 Identities = 254/563 (45%), Positives = 356/563 (63%), Gaps = 2/563 (0%)

Query: 940  TGTTRNITSRKLIENELVLSSQVLNSMNEAVVVAGLDYRIRSVNPAFSAITGYSEGQISD 999
            +GT R + + +   + L L+S V ++  E +VV  L+ R+ +VNPAF  ITGY E ++  
Sbjct: 73   SGTPRELAACRDYVHRLNLASAVFSAAREGIVVTDLEGRVEAVNPAFCQITGYGEAELQG 132

Query: 1000 KFLIHLAYSRQQRDLFNSIEQQLLRHKHWAGEIWIRNKARRAILVWLEINQVIDVKGETS 1059
              L  L   RQ    +  + + LL   HW GEIW R K       WL I+ V D   +  
Sbjct: 133  FNLRLLKSGRQDGAFYRQLWRDLLESGHWQGEIWNRRKNGETYPQWLTISTVRDEAHQPV 192

Query: 1060 HFVAVFTDITERKKAEEDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFL 1119
             +V VF D++  +++E+ L  LA  D LT LPNRTLF  RL HA+S + R     A+LFL
Sbjct: 193  SYVGVFLDLSPIRRSEQKLLHLAHHDPLTDLPNRTLFLARLEHALSLSAREGGSGAVLFL 252

Query: 1120 DLDRFKHINDSMGHHIGDLLLKAVAHRLQSAVREGDTVARLGGDEFTIILEGVAKTKAAT 1179
            DLDRFK +NDS+GH  GD LL AVA RL+  +RE DT+ARLGGDEF ++LE  A  + A 
Sbjct: 253  DLDRFKDVNDSLGHPTGDRLLCAVAERLRPCLRESDTLARLGGDEFLLLLETAATPERAA 312

Query: 1180 LISEKVLKAFQAPFLLDDKS-LNISTSIGISLYPNDAKDVDSLIKFADTAMYHAKALGRN 1238
            +++EK+L+   APF LDD+S + +  SIGI LYP D  +  +LI+ AD+A+Y AKA GR+
Sbjct: 313  VVAEKLLEQLAAPFRLDDRSEVYVGASIGICLYPADGDNATTLIQHADSALYQAKAAGRH 372

Query: 1239 NFQFYTNKLNEMATRHMQLETGLKQAISHNELSLVYQPKFCLRNGSLTGLEALLRWQHSE 1298
             F+FY+      A   + LE  L++ +   E  L YQP+  LR  SL G+EAL+RW+   
Sbjct: 373  TFRFYSEAQTRQADARLALEAALRRGLEKEEFLLYYQPQVDLRTASLEGVEALVRWRLPG 432

Query: 1299 LGPISPAEFIPLAEETGMINQIGHWVINQSCQQLAEWNELGFSDISMAVNLSARQLK-AD 1357
               + PA FIPLAEETG+I  +G WV+ Q+C+Q+ +W   G     +AVNLS+RQ + AD
Sbjct: 433  GELVPPARFIPLAEETGLILPLGEWVLRQACRQMQQWVARGLPIRRVAVNLSSRQFRQAD 492

Query: 1358 IISTIEVALAVSGLPAKALELELTESMIMGNPQESVNILSKLKALGLTIAVDDFGTGYSS 1417
            ++  I   LA +GL  + LELE+TES++M N  +    L  L+A+G+ +A+DDFGTGYSS
Sbjct: 493  LLQRINAILAETGLAPRYLELEITESLLMDNSAQVDAKLEALEAMGIRLAIDDFGTGYSS 552

Query: 1418 LSYLKRFPIDTLKIDREFVRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQEQLNFL 1477
            LSYLKRFP+ TLK+DR F+RDI +DP  + I ++II L   L+++++AEGVET +Q   L
Sbjct: 553  LSYLKRFPLHTLKLDRSFIRDIADDPVSSNIVASIIELGQHLDMDILAEGVETDQQRGIL 612

Query: 1478 ALQGCDQVQGFLLSKPLSAQDCQ 1500
               GC   QG+L S PL A++ +
Sbjct: 613  LQNGCRTCQGYLFSHPLPAEELE 635