Pairwise Alignments

Query, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1158 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  504 bits (1299), Expect = e-146
 Identities = 262/592 (44%), Positives = 374/592 (63%), Gaps = 7/592 (1%)

Query: 922  LERGKVVETNAQERPIRMTGTT------RNITSRKLIENELVLSSQVLNSMNEAVVVAGL 975
            L  G+V E      P+ + G         +IT+R+  E +L LS++V    +E +V+   
Sbjct: 566  LASGEVREVEVHSGPVLLRGRRLLYSIIHDITARRRAEEQLRLSAKVFEGASEGIVICDR 625

Query: 976  DYRIRSVNPAFSAITGYSEGQISDKFLIHLAYSRQQRDLFNSIEQQLLRHKHWAGEIWIR 1035
            + RI SVN AF  ITGY+E ++  +    L   R     F ++   L     W GEIW R
Sbjct: 626  NNRIMSVNRAFVEITGYAEAEVQGRDPRVLNSGRHDAAFFANLWHHLKTAGTWQGEIWNR 685

Query: 1036 NKARRAILVWLEINQVIDVKGETSHFVAVFTDITERKKAEEDLRFLASFDTLTGLPNRTL 1095
             K       WL I  V D  GE S++VAVF D++ERK+ EE +RFLA  D LTGLPNR+L
Sbjct: 686  RKGGEVYPEWLSITTVRDEAGEVSNYVAVFADVSERKRNEEHIRFLAEHDYLTGLPNRSL 745

Query: 1096 FQDRLNHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGDLLLKAVAHRLQSAVREGD 1155
              DRL  AI+ A R++  +AL+F+DLDRFK+INDS+GH +GD LL+ V  R+Q+ VR  D
Sbjct: 746  LHDRLQQAIALAERNSESLALMFIDLDRFKNINDSLGHQVGDQLLQEVGRRIQACVRSAD 805

Query: 1156 TVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPFLLDDKSLNISTSIGISLYPNDA 1215
            TV+R GGDEF I+L  +   + A  ++EK+L++   P+ L    L I+ SIGI+++P D 
Sbjct: 806  TVSRPGGDEFIILLPSIETPQDAARVAEKLLESLNRPYQLGGHELVITASIGIAVFPEDG 865

Query: 1216 KDVDSLIKFADTAMYHAKALGRNNFQFYTNKLNEMATRHMQLETGLKQAISHNELSLVYQ 1275
            +D  +L+K AD AMY++K  GR++F F+T  +N      + LE  L++A+   E  L YQ
Sbjct: 866  RDFQTLVKNADAAMYYSKEAGRDSFHFFTPDMNARVFERLSLENSLRRALERQEFLLYYQ 925

Query: 1276 PKFCLRNGSLTGLEALLRWQHSELGPISPAEFIPLAEETGMINQIGHWVINQSCQQLAEW 1335
            P+  + +G + G EAL+RWQH ++G +SPA FIP+AE++G+I  IG WV+ ++C+Q   W
Sbjct: 926  PQVDMPSGRVIGFEALIRWQHPQMGLVSPARFIPVAEDSGLIVPIGEWVLGEACRQNRAW 985

Query: 1336 NELGFSDISMAVNLSARQLK-ADIISTIEVALAVSGLPAKALELELTESMIMGNPQESVN 1394
             E G   + +AVN+SA Q +     +++E ALA SGL    LELELTESM++   Q + +
Sbjct: 986  QEQGMPAVPVAVNISALQFRQPQFEASVERALAESGLEPAWLELELTESMMLHQGQGATD 1045

Query: 1395 ILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKIDREFVRDITNDPDDAAITSAIIA 1454
            +L +LKA G+ +++DDFGTGYSSL+YLKR P+D LKID+ FVRDI +D   AAIT+ II 
Sbjct: 1046 LLDRLKARGVRLSIDDFGTGYSSLAYLKRLPLDKLKIDQAFVRDIASDAGGAAITATIIQ 1105

Query: 1455 LAHSLELNVVAEGVETQEQLNFLALQGCDQVQGFLLSKPLSAQDCQTLLQQR 1506
            +AH+L L+V+AEGVET+ QL FL    C   QGF  ++P+ A D +     R
Sbjct: 1106 MAHNLGLSVIAEGVETEAQLEFLQAHDCASAQGFYFARPMPAADIRAFWDDR 1157