Pairwise Alignments

Query, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 874 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  471 bits (1212), Expect = e-136
 Identities = 261/613 (42%), Positives = 372/613 (60%), Gaps = 10/613 (1%)

Query: 898  LQGRSPFFEVEYRIEHSPGKWVWI-LERGKVVETNAQERPIRMTGTTRNITSRKLIENEL 956
            L+GR+  FE EYR   S G+ +W+ L    V++   Q   +       + T RK  E +L
Sbjct: 266  LEGRTGRFEGEYRASLS-GRQLWVSLVAAPVLDQGGQL--LGGIAIVEDATERKRAELQL 322

Query: 957  VLSSQVLNSMNEAVVVAGLDYRIRSVNPAFSAITGYSEGQISDKFLIHLAYSRQQRDLFN 1016
               S+ +      +V+   +  I  VNP F+  TGYS  +        L       +++ 
Sbjct: 323  RQLSRAVEQSPATIVITDTNGVIEYVNPKFTRTTGYSAEEAVGLKPSVLKSGETPLEVYQ 382

Query: 1017 SIEQQLLRHKHWAGEIWIRNKARRAILVW--LEINQVIDVKGETSHFVAVFTDITERKKA 1074
             +   +     W G     N+ R   L W    I+ + D     +HFVAV  DITE+++ 
Sbjct: 383  ELWSTIASGGQWEGVF--HNRRRNGELYWEHATISPITDDNQRITHFVAVKEDITEKRRQ 440

Query: 1075 EEDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFLDLDRFKHINDSMGHH 1134
            E+ +  LA FD LTGLPNRTL  DR++  ++ A R    +ALLF+DLD FK +NDS+GH 
Sbjct: 441  EDRIHQLAYFDELTGLPNRTLLHDRVSQCLAAAEREQETLALLFIDLDNFKTVNDSLGHF 500

Query: 1135 IGDLLLKAVAHRLQSAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPFL 1194
             GD LL++VA RL+  VR+ DTV+RLGGDEF ++L   A+   A+ ++ K++     PF+
Sbjct: 501  TGDRLLQSVAQRLKGCVRDSDTVSRLGGDEFVVVLAD-AQLDGASQVARKIIDRVGQPFV 559

Query: 1195 LDDKSLNISTSIGISLYPNDAKDVDSLIKFADTAMYHAKALGRNNFQFYTNKLNEMATRH 1254
            +D   L ++ SIGISL+P+DA+D  SL+K ADTAMY AK  GRN +QF+T ++N +A   
Sbjct: 560  IDGHQLTVTPSIGISLFPHDARDFQSLLKNADTAMYQAKESGRNAYQFFTAEMNVLAFER 619

Query: 1255 MQLETGLKQAISHNELSLVYQPKFCLRNGSLTGLEALLRWQHSELGPISPAEFIPLAEET 1314
            + LE  L+QA+   E  L YQP+  + +G + G EAL+RW H ELG + PA FIP+AE++
Sbjct: 620  LVLENALRQAVERQEFVLHYQPQVDMGSGRVIGAEALVRWLHPELGMVPPARFIPVAEDS 679

Query: 1315 GMINQIGHWVINQSCQQLAEWNELGFSDISMAVNLSARQLK-ADIISTIEVALAVSGLPA 1373
            G+I  IG WV+ ++C+Q   W E G   I +AVNLSA QL+ +++  ++   L  +GL +
Sbjct: 680  GLIGAIGDWVLYEACRQNRAWQEAGLPAIPVAVNLSAVQLRQSELHESVAELLRRTGLES 739

Query: 1374 KALELELTESMIMGNPQESVNILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKIDR 1433
            + LELELTE  +M + + +V  L +L  +G+ +++DDFGTGYSSLSYLKRFPID LKID+
Sbjct: 740  RYLELELTERTVMEDAEATVRCLRRLDEMGVMLSIDDFGTGYSSLSYLKRFPIDKLKIDQ 799

Query: 1434 EFVRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQEQLNFLALQGCDQVQGFLLSKP 1493
             FVRDI  D DD AI  AII++ HSL L V+AEGVET EQL  L   GCD+ QGF   +P
Sbjct: 800  SFVRDIVADADDQAIAVAIISMGHSLRLRVIAEGVETAEQLEILHRHGCDEAQGFHFGRP 859

Query: 1494 LSAQDCQTLLQQR 1506
            + A +    L +R
Sbjct: 860  MPADEFAAYLARR 872