Pairwise Alignments

Query, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 953 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  478 bits (1231), Expect = e-138
 Identities = 261/584 (44%), Positives = 365/584 (62%), Gaps = 6/584 (1%)

Query: 926  KVVETNAQERPIRMTGTTRNITSRKLIENELVLSSQVLNSMNEAVVVAGLDYRIRSVNPA 985
            K    +A+ R   + G   +IT RK  E EL L+++V ++ NEA +V   D  IRSVN A
Sbjct: 368  KATFMDAEGRVAGLVGVMVDITERKRQEEELRLAAKVFDTSNEAFLVTDADNNIRSVNRA 427

Query: 986  FSAITGYSEGQISDKFLIHLAYSRQQRDLFNSIEQQLLRHKHWAGEIWIRNKARRAILVW 1045
            F   TGYS  ++  +    L+     +  +  + + L    +W GEI+ R K+      W
Sbjct: 428  FCETTGYSAEEVLGRNPRLLSSGHHDKTFYRQMWEALNSQGYWQGEIYDRRKSGEIYPKW 487

Query: 1046 LEINQVIDVKGETSHFVAVFTDITERKKAEEDLRFLASFDTLTGLPNRTLFQDRLNHAIS 1105
              IN V D +G   + VAVF+DI++RK  EE L+FLA  D LTGLPNR L + RL  A+ 
Sbjct: 488  TRINVVKDDQGRVVNHVAVFSDISDRKALEERLQFLAQHDHLTGLPNRNLLRLRLEQAVE 547

Query: 1106 QAHRSN----NIVALLFLDLDRFKHINDSMGHHIGDLLLKAVAHRLQSAVREGDTVARLG 1161
             A        N VALL LDLD FK INDS+GHH GD LL+ V  RL++ +RE  T+ R G
Sbjct: 548  SAMERGAGGINPVALLLLDLDHFKTINDSLGHHAGDQLLRTVVKRLKNILRESSTLCRQG 607

Query: 1162 GDEFTIILEGVAKTKAATLISEKVLKAFQAPFLLDDKSLNISTSIGISLYPNDAKDVDSL 1221
            GDEF I+L         +  +E VL A   PF +D   L+I+ SIGISL P+D  D D+L
Sbjct: 608  GDEFLIVLPQAQDLARVSRAAETVLAALATPFEVDGHPLSITGSIGISLAPDDGSDFDTL 667

Query: 1222 IKFADTAMYHAKALGRNNFQFYTNKLNEMATRHMQLETGLKQAISHNELSLVYQPKFCLR 1281
            +K ADTA+ HAK  GRN ++F+T  +N      + L+  L QA+   EL L YQP+  L 
Sbjct: 668  LKKADTALVHAKQSGRNAYRFFTEAMNVSTLERLTLQQRLHQALERQELVLYYQPQLDLA 727

Query: 1282 NGSLTGLEALLRWQHSELGPISPAEFIPLAEETGMINQIGHWVINQSCQQLAEWNELGFS 1341
            +G + G+EALLRW+  E G + P +FIPLAEETG+I  +G WVI ++C+Q   W + G  
Sbjct: 728  SGRVVGVEALLRWRTPE-GLVPPGKFIPLAEETGLIVPMGAWVIQEACRQARTWLDAGLP 786

Query: 1342 DISMAVNLSARQLKAD-IISTIEVALAVSGLPAKALELELTESMIMGNPQESVNILSKLK 1400
             ++MAVNLSA Q   D ++ T+  AL+ + LPA +LELELTES+++ + + ++  L  + 
Sbjct: 787  PMTMAVNLSALQFHRDNLLITVGDALSAASLPAASLELELTESILIQDAEATLATLKAMN 846

Query: 1401 ALGLTIAVDDFGTGYSSLSYLKRFPIDTLKIDREFVRDITNDPDDAAITSAIIALAHSLE 1460
            A+G+ +++DDFGTGYSSL+YLKRF +D LKID+ FVRDIT+D D AAI  A++ +A SL+
Sbjct: 847  AMGVLLSIDDFGTGYSSLAYLKRFTVDKLKIDQSFVRDITSDGDSAAIVRAVVQMASSLK 906

Query: 1461 LNVVAEGVETQEQLNFLALQGCDQVQGFLLSKPLSAQDCQTLLQ 1504
            L  +AEGVET+ Q   L   GCD+VQG+L ++P+ A +C+  L+
Sbjct: 907  LKTIAEGVETESQAAALRATGCDEVQGYLYARPMPAAECEAYLR 950