Pairwise Alignments

Query, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 972 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  468 bits (1203), Expect = e-135
 Identities = 249/553 (45%), Positives = 350/553 (63%), Gaps = 2/553 (0%)

Query: 944  RNITSRKLIENELVLSSQVLNSMNEAVVVAGLDYRIRSVNPAFSAITGYSEGQISDKFLI 1003
            R+I+  K  E  L L+++V +S+ EA+VV     RI+SVNPAFS +TGYSE     +   
Sbjct: 399  RDISEIKQAEARLHLAARVFDSLGEAMVVTDARGRIQSVNPAFSEVTGYSEADARGRAPG 458

Query: 1004 HLAYSRQQRDLFNS-IEQQLLRHKHWAGEIWIRNKARRAILVWLEINQVIDVKGETSHFV 1062
            H+  S Q    F + + Q L     W GE+  R K+      WL I  + D  G+ S +V
Sbjct: 459  HILASGQHDPAFYAQMWQSLQEQGKWQGEVINRRKSGETYPEWLSITAIKDGAGQVSQYV 518

Query: 1063 AVFTDITERKKAEEDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFLDLD 1122
             +FTDIT+RK+AE  +  LA  D LTGLPNR LF DRL +A+ QAHRS   +A+L LDLD
Sbjct: 519  GLFTDITDRKQAEAHIHHLAYHDPLTGLPNRRLFYDRLENALRQAHRSRRKLAVLLLDLD 578

Query: 1123 RFKHINDSMGHHIGDLLLKAVAHRLQSAVREGDTVARLGGDEFTIILEGVAKTKAATLIS 1182
            RFK +ND++GH  GDLLLK V  RL   +REGDT+ARLGGDEF ++L  V   + A++++
Sbjct: 579  RFKAVNDTLGHDQGDLLLKEVGARLSLCLREGDTLARLGGDEFVLLLPEVLSAEDASIVA 638

Query: 1183 EKVLKAFQAPFLLDDKSLNISTSIGISLYPNDAKDVDSLIKFADTAMYHAKALGRNNFQF 1242
             K+L  F  P  L ++ +  STSIGI+LYP D +D +SL+K AD AMY AK  GR  ++F
Sbjct: 639  GKLLAQFDQPVRLGEREIFASTSIGIALYPADGEDGESLLKHADVAMYAAKDGGRAAYRF 698

Query: 1243 YTNKLNEMATRHMQLETGLKQAISHNELSLVYQPKFCLRNGSLTGLEALLRWQHSELGPI 1302
            +    NE +   ++LE  L++A+   +L L YQP+    +G + G+EAL+RW+H   G +
Sbjct: 699  FIASHNERSLERLELENDLRRAVEGEQLLLYYQPQIGASSGRIAGVEALVRWRHPTRGLV 758

Query: 1303 SPAEFIPLAEETGMINQIGHWVINQSCQQLAEWNELGFSDISMAVNLSARQLKA-DIIST 1361
             P  FI LAE  G+I+ IGHW +  +C+QL  W E G     +AVN+SARQL+  D    
Sbjct: 759  MPDSFIALAENAGLIDAIGHWCLVAACRQLRAWQEQGVPVPRVAVNVSARQLRRWDFAQE 818

Query: 1362 IEVALAVSGLPAKALELELTESMIMGNPQESVNILSKLKALGLTIAVDDFGTGYSSLSYL 1421
            +   +  SG+    LELELTES +  +P++ + I S L+  G+ +++DDFGTGYSSLSYL
Sbjct: 819  VLQVVTQSGIDPAGLELELTESSLADDPEQILAIFSTLRQAGVRVSIDDFGTGYSSLSYL 878

Query: 1422 KRFPIDTLKIDREFVRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQEQLNFLALQG 1481
             R+P+D +KIDR FV  + +D +  ++  A+I LAH L +  VAEGVET+ Q   L+   
Sbjct: 879  SRYPVDEVKIDRSFVSRLLDDREARSVVRAVILLAHGLGMRTVAEGVETEAQWQVLSDLD 938

Query: 1482 CDQVQGFLLSKPL 1494
            CD++QG+L SKP+
Sbjct: 939  CDELQGYLFSKPV 951