Pairwise Alignments

Query, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1036 a.a., PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein from Paraburkholderia bryophila 376MFSha3.1

 Score =  454 bits (1168), Expect = e-131
 Identities = 251/585 (42%), Positives = 359/585 (61%), Gaps = 8/585 (1%)

Query: 926  KVVETNAQERPIRMTGTTRNITSRKLIENELVLSSQVLNSMNEAVVVAGLDYR---IRSV 982
            K+  T+ + R I + G+  +IT RK  +  L L S+ L++   A+++         I  V
Sbjct: 444  KLPFTDGEGRVIGVLGSYTDITERKRADLALRLQSRALDASVNAILITAPSPSGNLIEYV 503

Query: 983  NPAFSAITGYSEGQISDKFLIHLAYSRQQRDLFNSIEQQLLRHKHWAGEIWIRNKARRAI 1042
            NPAF  ITGY   ++       L    ++++   SI + L  ++  +  +  RN  +   
Sbjct: 504  NPAFMRITGYDPAEVIGHDCRVLQRDDREQEGVASIRKALAANREVSAVV--RNYRKDGA 561

Query: 1043 LVW--LEINQVIDVKGETSHFVAVFTDITERKKAEEDLRFLASFDTLTGLPNRTLFQDRL 1100
            L W  L I  V + +G  +H + V  D+T+  + +E L + A++D+LT LPNR L +DRL
Sbjct: 562  LFWNQLFIAPVPNAEGVITHHIGVINDVTDLMRYQEQLEYQANYDSLTRLPNRNLLRDRL 621

Query: 1101 NHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGDLLLKAVAHRLQSAVREGDTVARL 1160
             HA+  A R +  VA++F+DLD FK++NDS+GH +GD LL  VA RL    R  DTVAR 
Sbjct: 622  QHALIVAQRQHKGVAVVFMDLDGFKNVNDSLGHSVGDRLLGVVAERLARCTRTSDTVARH 681

Query: 1161 GGDEFTIILEGVAKTKAATLISEKVLKAFQAPFLLDDKSLNISTSIGISLYPNDAKDVDS 1220
            GGDEF I++      ++     E+V  +   P  LD   L +  S+G SL+P D  D ++
Sbjct: 682  GGDEFVIVMTDTVDEQSLIAWMERVRASISEPVWLDGTELYVGCSMGASLFPQDGDDAET 741

Query: 1221 LIKFADTAMYHAKALGRNNFQFYTNKLNEMATRHMQLETGLKQAISHNELSLVYQPKFCL 1280
            L+K AD AMY AK +GRN FQFY  ++N  A   + LE  L++A+  NE  L YQP+  +
Sbjct: 742  LMKKADLAMYRAKDMGRNTFQFYQPEMNASAGARLNLERRLRRALRDNEFLLHYQPQVDI 801

Query: 1281 RNGSLTGLEALLRWQHSELGPISPAEFIPLAEETGMINQIGHWVINQSCQQLAEWNELGF 1340
             +G + G EAL+RW   E+G + P+ FIP+AEE+G+I  +  WV+ ++C+Q   W +LG 
Sbjct: 802  DSGQIVGTEALVRWSDPEVGLVPPSSFIPVAEESGLIGPLSEWVLREACRQNKAWQDLGL 861

Query: 1341 SDISMAVNLSARQL-KADIISTIEVALAVSGLPAKALELELTESMIMGNPQESVNILSKL 1399
                ++VNLSAR   + DI   +   L  +GL  + LELELTES IM N +E+V++L++L
Sbjct: 862  PPARVSVNLSARVFQQRDIAKLVMQVLDETGLEPQYLELELTESAIMRNAEEAVSMLNEL 921

Query: 1400 KALGLTIAVDDFGTGYSSLSYLKRFPIDTLKIDREFVRDITNDPDDAAITSAIIALAHSL 1459
             ALG+ +A+DDFGTGYSSLSYLKRFP+D LKIDR FV DI    DD  ITSAIIALAHSL
Sbjct: 922  HALGIGLAIDDFGTGYSSLSYLKRFPVDRLKIDRSFVSDIGISGDDETITSAIIALAHSL 981

Query: 1460 ELNVVAEGVETQEQLNFLALQGCDQVQGFLLSKPLSAQDCQTLLQ 1504
            +L V+AEGVET  QL+FL  + CD++QGF  +KPLS +    L+Q
Sbjct: 982  KLQVIAEGVETSAQLDFLKERACDEMQGFYFAKPLSTEAIYDLMQ 1026