Pairwise Alignments

Query, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1228 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) (RefSeq) from Shewanella sp. ANA-3

 Score =  494 bits (1273), Expect = e-143
 Identities = 285/696 (40%), Positives = 406/696 (58%), Gaps = 24/696 (3%)

Query: 823  SQQQEFETSIRASEERLKL---------ALWASGDGMW---DWNIQEQQVYRTNTDIAVP 870
            ++ Q F+ ++  SE+R +          AL    DG +   +    E   Y      A+ 
Sbjct: 542  ARSQTFQATLMESEQRYRTLFDKAPVGHALKRLEDGQFVAINQAFMEITGYTLEELQAID 601

Query: 871  QWNGHQLLHDNAHPEDRERFKYELTEHLQGRSPFFEVEYRIEHSPGKWVWILERGKVVET 930
             W    + + ++  E  ER K         R   ++  YR  H  G+ V +   G +V  
Sbjct: 602  PWELTPIRYQSSETEQLERLKQTR------RYGPYQKHYR--HKDGQLVAVRLNGSLVTA 653

Query: 931  NAQERPIRMTGTTRNITSRKLIENELVLSSQVLNSMNEAVVVAGLDYRIRSVNPAFSAIT 990
               E+ I       +IT ++     + L +QV     E + +   +  I  VN AF+ IT
Sbjct: 654  ANGEQLILFI--VEDITEQERTVARVNLLAQVFQQSGEGITIMDANDIIVDVNSAFTQIT 711

Query: 991  GYSEGQISDKFLIHLAYSRQQRDLFNSIEQQLLRHKHWAGEIWIRNKARRAILVWLEINQ 1050
            GYS  +I  K    L   R  R +   +   L +   W GE+W R+K       WL ++ 
Sbjct: 712  GYSRDEIIGKNCRFLEAERTDRSIDAQVRAALEQTGFWQGEVWDRHKEGFDFPKWLMMSI 771

Query: 1051 VIDVKGETSHFVAVFTDITERKKAEEDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRS 1110
            V D  G  SH++  FTDI+ERK  EE + FLA  D+LT LPNR   Q RL     +A  S
Sbjct: 772  VRDETGAISHYIGSFTDISERKVNEERIHFLAHHDSLTLLPNRLSLQSRLEKVFQEAFIS 831

Query: 1111 NNIVALLFLDLDRFKHINDSMGHHIGDLLLKAVAHRLQSAVREGDTVARLGGDEFTIILE 1170
               +A++F+D+D FK+IND++GHH+GD+LL  VA RL++ +   D VARLGGDEF ++L 
Sbjct: 832  QTQIAVMFIDMDHFKNINDTLGHHVGDMLLLEVARRLKNIMGNDDIVARLGGDEFVVVLS 891

Query: 1171 GVAKTKAATLISEKVLKAFQAPFLLDDKSLNISTSIGISLYPNDAKDVDSLIKFADTAMY 1230
                 + A  ++E +       +L+D+K L+ S SIGISL+P D   V++L+K AD AMY
Sbjct: 892  DTDHDRVAK-VAEALRSGLNQTYLIDNKPLHSSPSIGISLFPTDGDSVEALMKNADMAMY 950

Query: 1231 HAKALGRNNFQFYTNKLNEMATRHMQLETGLKQAISHNELSLVYQPKFCLRNGSLTGLEA 1290
             AKA GRNN+QF+T  +N + T   Q+ETGL+QAI+ NEL L YQP+  + +G + G+EA
Sbjct: 951  RAKAAGRNNYQFFTAAMNTLVTERQQIETGLRQAIACNELLLYYQPQVDISSGQVVGVEA 1010

Query: 1291 LLRWQHSELGPISPAEFIPLAEETGMINQIGHWVINQSCQQLAEWNELGFSDISMAVNLS 1350
            L+RWQH ELG ++P  FIP+AEE  MI  IG WV+  +  QLAEW + G   + MAVNLS
Sbjct: 1011 LIRWQHPELGLVAPDRFIPIAEEIDMIIPIGQWVLENALAQLAEWRDKGAKGLRMAVNLS 1070

Query: 1351 ARQLKAD-IISTIEVALAVSGLPAKALELELTESMIMGNPQESVNILSKLKALGLTIAVD 1409
            A QL+ D I++ I   L    L   ALELE+TES+ M  P+++  +L++L+  G+ +A+D
Sbjct: 1071 AHQLRKDTIVADIINVLTKHKLGKGALELEITESVAMQYPEQNAKLLAELRQHGIELAID 1130

Query: 1410 DFGTGYSSLSYLKRFPIDTLKIDREFVRDITNDPDDAAITSAIIALAHSLELNVVAEGVE 1469
            DFGTGYSSLSYLK  P+D LK+DR FV+DI +DP+DAAI++A I++AH L L VVAEGVE
Sbjct: 1131 DFGTGYSSLSYLKLLPLDRLKLDRSFVKDIESDPNDAAISAATISMAHELGLTVVAEGVE 1190

Query: 1470 TQEQLNFLALQGCDQVQGFLLSKPLSAQDCQTLLQQ 1505
             + QL  L+  GCD VQG+  SKPL+A DC   +++
Sbjct: 1191 NEAQLVLLSGMGCDLVQGYYFSKPLAADDCFRFIER 1226