Pairwise Alignments

Query, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1505 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3

 Score = 2660 bits (6896), Expect = 0.0
 Identities = 1306/1504 (86%), Positives = 1403/1504 (93%)

Query: 5    IGVALSQPILRLIFSVLCIISFFTVPSTGLALPLNAANTQLKFEHIRSEDGLNQNTITSL 64
            IGV LS P+L+L F  LC++S    P TG ALPLNAANTQLKFEHIRSE+GLNQNTITSL
Sbjct: 2    IGVILSHPVLKLFFGALCLLSLCGAPLTGSALPLNAANTQLKFEHIRSEEGLNQNTITSL 61

Query: 65   FMDSAGMLWIGTQDGLHSYNGYNFNLFIHSPNDPKSISESYVSDIIQDAEGYLWVGSFSQ 124
            FMDSAGMLWIGTQDGLHSYNGYNFNLFIHSPN+P SISES++SDIIQDAEGYLW+G+FSQ
Sbjct: 62   FMDSAGMLWIGTQDGLHSYNGYNFNLFIHSPNNPSSISESFISDIIQDAEGYLWIGTFSQ 121

Query: 125  GINRLDLKTGTFKRFGVEQGLTDPRVTKLNIVGNTLWIGTQSGLFSFSTRTNRLTKVSLG 184
            G+NRLDL TGTF+RFG+EQGLTDPRVTKLNIVGNTLWIGTQ GLFS S +T R+T+VSLG
Sbjct: 122  GVNRLDLNTGTFERFGLEQGLTDPRVTKLNIVGNTLWIGTQGGLFSLSIKTQRITQVSLG 181

Query: 185  TSIEPYITSLANVDNTYLLAGTKGSGTFAVSANTITRLNIPQDAIAYQVKANSSRAITLA 244
             S+EP+ITSLANV+NTYLLAGT+ SGTFA+S+N ITRLN+PQD  AYQ+KANS+RAITLA
Sbjct: 182  NSVEPHITSLANVENTYLLAGTRASGTFALSSNAITRLNVPQDLTAYQIKANSTRAITLA 241

Query: 245  LGNQLWHYDLATQQGKALWQADKNIPYIKDFIQTPEGQFWVVGPEAGLIQLEREADKFVA 304
            LGNQLWHYDL + QG  LWQA+ +IPY+KDFIQTP+GQFWVVGPEAGLIQLEREA +FVA
Sbjct: 242  LGNQLWHYDLVSHQGSILWQAEDDIPYLKDFIQTPQGQFWVVGPEAGLIQLEREAGRFVA 301

Query: 305  TYHQYDMKRTNSISENNILSLLEDPFGNLWLGASYSGLNKINTRRQYFQHLFEYTNELPL 364
             YH+YDM+R NSIS+NNIL LL+D FGNLWLG SYSGLNKINTRRQYFQHLFEYT ELP 
Sbjct: 302  AYHKYDMQRPNSISDNNILCLLQDTFGNLWLGGSYSGLNKINTRRQYFQHLFEYTTELPQ 361

Query: 365  QSNNVRTIYRSQDQALWIGTEGAGLKRLAVNSTTFEHYTSFFAKALGQQTQHLNLILRSI 424
            QSNN+RTI+RSQD+ALWIGTEGAGLKRLA N+  +EHYTS FAKALG++T+HLNL+LR+I
Sbjct: 362  QSNNIRTIFRSQDKALWIGTEGAGLKRLAFNAKQYEHYTSAFAKALGKETRHLNLVLRAI 421

Query: 425  VQDKQGILWFASNYGLGRLTPNGEFNLLNVADSRDTSAEANYIRSLELDNQNRLWVATSH 484
             QD+QG+LWFASNYGLGRLTP+GEF LL +  S+D ++EANYIRSLELD Q +LWVATSH
Sbjct: 422  TQDRQGVLWFASNYGLGRLTPSGEFTLLKLTQSQDPASEANYIRSLELDAQGQLWVATSH 481

Query: 485  ALYRKSSVNDEFTPVPLTGIENFHPIQNLLLTLKSDKNILWIGSLNGLVKLDMQTGHGEV 544
            ALYRK+   DEFT VPLT IENFHP QNLLL L++D N LWIGSLNGLVKLDMQTG G+ 
Sbjct: 482  ALYRKALEKDEFTSVPLTDIENFHPTQNLLLILRADGNTLWIGSLNGLVKLDMQTGQGQA 541

Query: 545  FYHDPHDKNSIINNRIRDIFVASNGDTWFATHGGISRLPAQALSPIFSDYTREQGLPSDT 604
            FYHDP +KN+IINNRIRDI VASNGD WFATHGGISRL AQA   +F DYTREQGLPSDT
Sbjct: 542  FYHDPENKNTIINNRIRDILVASNGDVWFATHGGISRLSAQAEDMVFRDYTREQGLPSDT 601

Query: 605  IYALLEDDDNHIWFSSNAGIGKLNPHNGKIINFNEQEGLQALEFNGGVKLKDSDGDLWFG 664
            IYALLEDD++HIWFSSNAGIGKLNP NGKIINFNEQEGLQALEFNGGVKLKDSDGDLWFG
Sbjct: 602  IYALLEDDEHHIWFSSNAGIGKLNPSNGKIINFNEQEGLQALEFNGGVKLKDSDGDLWFG 661

Query: 665  GINGINRFNPKTLPNQRSEARVALTAYKIAGQKQTILDLSHPPQIVMNYADQLISFEVTS 724
            GINGINRFNPK +P+QRSEA+VALTAYKIAG++ TILDLSHPP+I+MNY DQL+SFEVTS
Sbjct: 662  GINGINRFNPKAIPDQRSEAKVALTAYKIAGKRHTILDLSHPPKILMNYDDQLVSFEVTS 721

Query: 725  LDFSYPGKNRFSYFLEGFDNQWHDLPTGNEITFTNIDPGNYLLHVRHSLEYNSKGNYALL 784
            LDFSY GKNRFSY+LEGFDNQWHDLP+GNEITFTNI+PG+Y+LHVRHSLEYNS+G+YALL
Sbjct: 722  LDFSYTGKNRFSYYLEGFDNQWHDLPSGNEITFTNINPGHYVLHVRHSLEYNSEGSYALL 781

Query: 785  VNLTVKAPFYRTPFAYAFYVLFTLVSMGWALRWRKQKRSQQQEFETSIRASEERLKLALW 844
            V+LTVKAPFYR+  AYA YVL  L  MGW + WRKQKR QQQEFETSIRASEERLKLALW
Sbjct: 782  VDLTVKAPFYRSQIAYALYVLLALGLMGWIVLWRKQKREQQQEFETSIRASEERLKLALW 841

Query: 845  ASGDGMWDWNIQEQQVYRTNTDIAVPQWNGHQLLHDNAHPEDRERFKYELTEHLQGRSPF 904
            ASGDGMWDWNIQEQQVYRT+TDI V QW+ H LLHDNAHPEDRERFK  LT+HLQG +PF
Sbjct: 842  ASGDGMWDWNIQEQQVYRTHTDIPVSQWSSHTLLHDNAHPEDRERFKQVLTDHLQGHTPF 901

Query: 905  FEVEYRIEHSPGKWVWILERGKVVETNAQERPIRMTGTTRNITSRKLIENELVLSSQVLN 964
            FE+EYRIEHSPG W+WILERGKVVETN QE+P+RMTGTTRNITSRKLIENELVLSSQVLN
Sbjct: 902  FEMEYRIEHSPGNWLWILERGKVVETNNQEQPMRMTGTTRNITSRKLIENELVLSSQVLN 961

Query: 965  SMNEAVVVAGLDYRIRSVNPAFSAITGYSEGQISDKFLIHLAYSRQQRDLFNSIEQQLLR 1024
            SMNEAVVVAGLDYRIRSVNPAFSAITGYSE QISDK+LIHLAYSRQQRDLFNSIEQQLLR
Sbjct: 962  SMNEAVVVAGLDYRIRSVNPAFSAITGYSERQISDKYLIHLAYSRQQRDLFNSIEQQLLR 1021

Query: 1025 HKHWAGEIWIRNKARRAILVWLEINQVIDVKGETSHFVAVFTDITERKKAEEDLRFLASF 1084
            HKHWAGEIWIRN+AR+AILVWLEINQVIDVKGETSHFVAVFTDITERKKAEEDLRFLASF
Sbjct: 1022 HKHWAGEIWIRNRARKAILVWLEINQVIDVKGETSHFVAVFTDITERKKAEEDLRFLASF 1081

Query: 1085 DTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGDLLLKAVA 1144
            DTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGDLLLKAVA
Sbjct: 1082 DTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGDLLLKAVA 1141

Query: 1145 HRLQSAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPFLLDDKSLNIST 1204
            HRLQ+AVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPFLLDDKSL IST
Sbjct: 1142 HRLQNAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPFLLDDKSLTIST 1201

Query: 1205 SIGISLYPNDAKDVDSLIKFADTAMYHAKALGRNNFQFYTNKLNEMATRHMQLETGLKQA 1264
            SIGISLYPNDA+DVDSLIKFADTAMYHAKALGRNNFQFYTNKLNEMATRH+QLE GLKQA
Sbjct: 1202 SIGISLYPNDAEDVDSLIKFADTAMYHAKALGRNNFQFYTNKLNEMATRHVQLEAGLKQA 1261

Query: 1265 ISHNELSLVYQPKFCLRNGSLTGLEALLRWQHSELGPISPAEFIPLAEETGMINQIGHWV 1324
            IS NELSLVYQPKFCLR GSLTGLEALLRW HSELGPISPAEFIPLAEETG+INQIGHWV
Sbjct: 1262 ISRNELSLVYQPKFCLRKGSLTGLEALLRWHHSELGPISPAEFIPLAEETGIINQIGHWV 1321

Query: 1325 INQSCQQLAEWNELGFSDISMAVNLSARQLKADIISTIEVALAVSGLPAKALELELTESM 1384
            IN +CQQLAEWNELGF DISMAVNLSARQLKADIISTIEVAL+VSGLPAKALELELTESM
Sbjct: 1322 INHACQQLAEWNELGFGDISMAVNLSARQLKADIISTIEVALSVSGLPAKALELELTESM 1381

Query: 1385 IMGNPQESVNILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKIDREFVRDITNDPD 1444
            IMGNPQESVNILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKIDREFVRDITNDPD
Sbjct: 1382 IMGNPQESVNILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKIDREFVRDITNDPD 1441

Query: 1445 DAAITSAIIALAHSLELNVVAEGVETQEQLNFLALQGCDQVQGFLLSKPLSAQDCQTLLQ 1504
            DAAITSAIIALAHSLELNVVAEGVETQEQLNFLALQGCDQVQGFLLSKPLSAQDC  LLQ
Sbjct: 1442 DAAITSAIIALAHSLELNVVAEGVETQEQLNFLALQGCDQVQGFLLSKPLSAQDCLALLQ 1501

Query: 1505 QRTK 1508
            QR K
Sbjct: 1502 QRIK 1505