Pairwise Alignments

Query, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1009 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3

 Score =  486 bits (1250), Expect = e-141
 Identities = 270/679 (39%), Positives = 398/679 (58%), Gaps = 10/679 (1%)

Query: 829  ETSIRASEERLKLALWASGDGMWDWNIQEQQVYRT-------NTDIAVPQWNGHQLLHDN 881
            +  + AS E+L+L L +S  G+WDW+I+   + R          DI +   N  Q + D+
Sbjct: 322  DREVLASREQLELVLSSSDLGVWDWDIRNDHIERNARSADILGCDIDMLNANSRQWM-DS 380

Query: 882  AHPEDRERFKYELTEHLQGRSPFFEVEYRIEHSPGKWVWILERGKVVETNAQERPIRMTG 941
               EDR +  + +  H++G +   ++EYR++       WIL+ GKVV  +A    +RM G
Sbjct: 381  IVAEDRPKVLHSIEAHIRGETLQHKMEYRLKTLNRDIRWILDTGKVVSRDANNNALRMCG 440

Query: 942  TTRNITSRKLIENELVLSSQVLNSMNEAVVVAGLDYRIRSVNPAFSAITGYSEGQISDKF 1001
            T  +IT  KLIE  L LS+ V ++ +EA+ V      I +VN AF+AITGYSE +I  + 
Sbjct: 441  TYTDITEAKLIEESLKLSALVYDNSSEAMSVLDETGVIITVNAAFTAITGYSESEIRGQH 500

Query: 1002 LIHLAYSRQQRDLFNSIEQQLLRHKHWAGEIWIRNKARRAILVWLEINQVIDVKGETSHF 1061
            +  L         +  +  ++     W GE+  R K     ++WL IN + D  G+    
Sbjct: 501  IRLLYCDLNGHGFYTEMNNEIREKGEWQGEMRQRRKNNEEYVIWLTINTIKDKDGQPYRR 560

Query: 1062 VAVFTDITERKKAEEDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFLDL 1121
            VA+F+DIT++K++E  +   A++DTLTGLPNR +  + L   I  A R+ N  AL+FLDL
Sbjct: 561  VALFSDITDKKQSEHLIWKQANYDTLTGLPNRRMLLEYLGAEIKSADRNRNHFALMFLDL 620

Query: 1122 DRFKHINDSMGHHIGDLLLKAVAHRLQSAVREGDTVARLGGDEFTIILEGVAKTKAATLI 1181
            D FK +ND++GH +GDLLL   A RL+S VR+ D VARLGGDEFT++L  +   K    +
Sbjct: 621  DYFKEVNDTLGHAMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMVDHKGIERV 680

Query: 1182 SEKVLKAFQAPFLLDDKSLNISTSIGISLYPNDAKDVDSLIKFADTAMYHAKALGRNNFQ 1241
            +E +L+    P++L +++  IS SIGI+LYP+DA  ++ L+K AD AMY AK  GRN F 
Sbjct: 681  AEHILRRIAEPYVLGEETAYISASIGITLYPDDATSIEGLLKHADQAMYAAKDQGRNRFN 740

Query: 1242 FYTNKLNEMATRHMQLETGLKQAISHNELSLVYQPKFCLRNGSLTGLEALLRWQHSELGP 1301
            ++T  + E A   M+L   L+QA+   E  L YQP   +  G +   EALLRW H E G 
Sbjct: 741  YFTPSMQEYAKYRMRLIQDLRQAVVSKEFELHYQPIVTMTTGEVLKAEALLRWFHPERGY 800

Query: 1302 ISPAEFIPLAEETGMINQIGHWVINQSCQQLAEWNELGFSDISMAVNLSARQLKAD--II 1359
            +SPAEFIP+AE+TG+I +IG+WV  Q+ +Q A W +    DI ++VN S  Q + +  ++
Sbjct: 801  VSPAEFIPVAEDTGLIVEIGNWVFEQAARQSALWRKTFGVDIQISVNKSPIQFRDEGTLL 860

Query: 1360 STIEVALAVSGLPAKALELELTESMIMGNPQESVNILSKLKALGLTIAVDDFGTGYSSLS 1419
                  L    +    + +E+TE +++         L   +  G+ +++DDFGTGYSSL+
Sbjct: 861  HNWLELLQKLDVTGTGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLA 920

Query: 1420 YLKRFPIDTLKIDREFVRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQEQLNFLAL 1479
            YLK+F ID LKID+ F R+I  D  D  +  AII +AH L + V+AEGVET+ Q   L  
Sbjct: 921  YLKKFDIDYLKIDQSFTRNIDTDESDQTLCEAIIVMAHKLGMKVIAEGVETEAQRQVLLT 980

Query: 1480 QGCDQVQGFLLSKPLSAQD 1498
             GCD  QG+L SKP+SA +
Sbjct: 981  AGCDYGQGYLFSKPVSATE 999