Pairwise Alignments
Query, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1
Subject, 1433 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3
Score = 582 bits (1500), Expect = e-169
Identities = 434/1484 (29%), Positives = 715/1484 (48%), Gaps = 156/1484 (10%)
Query: 55 GLNQNTITSLFMDSAGMLWIGTQDGLHSYNGYNFNLFIHSPNDPKSISESYVSDIIQDAE 114
GL+Q T+TS+ D+ G LWIGT +GL+ ++G NF F D + S++ + D
Sbjct: 59 GLSQGTVTSIVQDNDGYLWIGTLNGLNRFDGRNFKHFYADGTD-SGLPSSFIRSLQLDKN 117
Query: 115 GYLWVGSFSQGINRLDLKTGTFKRFGVEQGLTDPRVTKLNIVGNTLWIGTQSGLFSFSTR 174
G L+VG+ G+ D +F ++G L + + +NI N+L IGT + + + +
Sbjct: 118 GDLYVGT-DNGLAIYDKSKDSFIKYG--HPLENKPIWSINISINSLIIGTDNSIIEITGK 174
Query: 175 TNRLTKVSLGTSIEPYITSLANVDNTYLLAGTKGSGTFAVSAN-TITRLNIPQDAIAYQV 233
N T G I + TYL G + N T+ + N+ +
Sbjct: 175 NNFNTLAQEGIG---EIKKSIKIGYTYLFKDYSGKLYELKNGNLTLIKENV------IDI 225
Query: 234 KANSSRAITLALGNQLWHYDLATQQGKALWQADKNIPYIKDFIQTPEGQFWVVG-PEAGL 292
+ + + L+ N L+ YD G + + D + F Q + + G E +
Sbjct: 226 EQKDANTLILSSKNGLFEYD-----GNLVKKIDD-----RAFSQLAKNNELIYGISENSI 275
Query: 293 IQLEREADKFVATYHQYDMKRTNSISENNILSLLEDPFGNLWLGASYSGLNKINT-RRQY 351
I + K + + +Y + N + + S S L K T
Sbjct: 276 INILTR--KIIGSLSEYAQDKATYFYVNKSYFSVGSVDQGFSIIKSQSNLVKHTTLANDS 333
Query: 352 FQHLFEYTNELPLQSNN--VRTIYRSQDQALWIGTEGAGLKRLAVNSTTFEHYTS--FFA 407
H+ + + + S++ + + +A+ T G K +N + TS F
Sbjct: 334 TWHITKNKSGFLVSSDSEYISLFNNNFQKAVDFNTHTKGYKYAVMNEGKLFYGTSSGLFV 393
Query: 408 KALGQQTQHLNLILRSIVQDKQGILWFASNYGLGRLTPNGEFNLL---NVADSRDTSAEA 464
T + S+ + G + A TP+G+ ++ NV ++ DT
Sbjct: 394 LENESATMLSQETISSLSSNDDGSILSAG-------TPDGKILIIKDSNVINTFDTQ-RG 445
Query: 465 NYIRSLELDNQNRLWVATSHALYRKSSVNDEFTPVPLTGIENFHPIQNLLLTLKSDKNIL 524
I +E+ ++N +VA+ L + + N+ LT +++ D N +
Sbjct: 446 EPIFDIEIISENLFYVASQGGLRKYENGNETVVSEQLT------------YSIEKDNNNI 493
Query: 525 WIGSLNGLVKLDMQTGHGEVFYHDPHDKNSIINNRIRDIFVASNGDTWFATHGGISRLPA 584
G+ + L++ + TG E + + SI+++ I I V+S G+
Sbjct: 494 LFGTSSALMRYNTLTGTIEKVLSNNKEIYSIVSD-IDFITVSSLGE-------------- 538
Query: 585 QALSPIFSDYTREQGLPSDTIYALLEDDDNHIWFSSNAGIGKLNPHNGKIINFNEQEGLQ 644
++ + NH ++ LN NG +N ++
Sbjct: 539 ----------------------VIVYNKKNHSSYT-------LNTSNGSQYEYNSPSAIR 569
Query: 645 ALEFNGGVKLKDSDGDLWFGGINGINRFNPKT----LPNQRSEARVALTAYKI--AGQKQ 698
EF + GINGI+ +P+ + NQ+ ++ +T + + Q++
Sbjct: 570 VNEF------------VLLAGINGISIVSPEEVNEYIKNQK-VSKTEITNFSVFNISQEK 616
Query: 699 TILDLSHP----PQIVMNYADQLISFEVTSLDFSYPGKNRFS----YFLEGFDNQWHDLP 750
LS P +I + Y++ SF DF P + F+ Y ++G + W
Sbjct: 617 NGKYLSQPIDVTNEIKLKYSEYPFSF-----DFISPMSDEFATSYYYRMQGLSDTWIYSN 671
Query: 751 TGNEITFTNIDPGNYLLHVRHSLEYNSKGNYALLVNLTVKAPFYRTPFAYAFY----VLF 806
N T+TN+ PG Y+ V + + + VN+ + P++ + A Y +LF
Sbjct: 672 GTNSATYTNLSPGKYVFQVYAMNKLSGDKSPEKEVNIIITPPWWSSTQAKVIYFIILMLF 731
Query: 807 TLVSMGWALRWRKQKRSQQQEFETSIRASEERLKLALWASGDGMWDWNIQEQQVYRTNTD 866
TL LR ++E + I SEERLKL+LW SGD MWDW+I+ ++R+N
Sbjct: 732 TLFVFKAILR--------KREIQRQIALSEERLKLSLWGSGDEMWDWDIETGNIFRSNIW 783
Query: 867 IAVP-----QWNGHQLLHDNAHPEDRERFKYELTEHLQGRSPFFEVEYRIEHSPGKWVWI 921
A+ +G+ N HP ++ER + L +H G + FE YR++ W+WI
Sbjct: 784 GALEFPRDGHRSGNSDEESNIHPMEQERVREALNKHFYGETDHFEAAYRVKGKDDSWIWI 843
Query: 922 LERGKVVETNAQERPIRMTGTTRNITSRKLIENELVLSSQVLNSMNEAVVVAGLDYRIRS 981
L+R K+VE + ++ +RMTGT +NI+ K E +L L + + +++E + + +YR
Sbjct: 844 LDRAKIVERDDKDNALRMTGTIKNISQFKQKEEQLKLFEKAIENISEGMFILDSEYRFVE 903
Query: 982 VNPAFSAITGYSEGQISDKFLIHLAYSRQQRDLFNSIEQQLLRHKHWAGEIWIRNKARRA 1041
VN A I S+ +D L + N I L + WA E+
Sbjct: 904 VNEACCRI---SQRNRTDFIGNLLTFDLYPESFSNQIRTMLKQQGRWASEVEASRGDNSH 960
Query: 1042 ILVWLEINQVIDVKGETSHFVAVFTDITERKKAEEDLRFLASFDTLTGLPNRTLFQDRLN 1101
+ L I+ + D GE SH+V VF+DI+ RK+ EE+LR L + D LTGLPNR+ Q L
Sbjct: 961 FHMELTIDAIYDELGELSHYVGVFSDISRRKQQEEELRKLTNNDLLTGLPNRSNLQVTLG 1020
Query: 1102 HAISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGDLLLKAVAHRLQSAVREGDTVARLG 1161
+ +++ AL+ LDLD FK INDS+GH IGD LLK V+ R++S + + ++ RLG
Sbjct: 1021 NLVNKEITH----ALMVLDLDNFKRINDSLGHQIGDQLLKLVSIRIKSILPKNTSIYRLG 1076
Query: 1162 GDEFTIILEGVAKTKAATLISEKVLKAFQAPFLLDDKSLNISTSIGISLYPNDAKDVDSL 1221
GDEF I+L+ + A+ I+ +V++AF+ F + ++ L + SIGI YP D + +L
Sbjct: 1077 GDEFAIVLDKTSDISASAAIAGRVIEAFKTMFEIGNEQLVLGVSIGIVFYPEDEQSEQAL 1136
Query: 1222 IKFADTAMYHAKALGRNNFQFYTNKLNEMATRHMQLETGLKQAISHNELSLVYQPKFCLR 1281
++ AD AMYHAK+ G N +QFY+ LN+ A + +++E +++ + + + YQPK L+
Sbjct: 1137 LRKADIAMYHAKSAGGNCYQFYSESLNQHAIKQLEIENLIREGLKEDLFEVYYQPKVDLK 1196
Query: 1282 NGSLTGLEALLRWQHSELGPISPAEFIPLAEETGMINQIGHWVINQSCQQLAEWNELGFS 1341
+G + G+EAL+R H G I P +FIPLAEE G+I +IG V+ ++C +W E G
Sbjct: 1197 SGHVAGMEALVRLNHPTRGLIPPNDFIPLAEENGLIIEIGEIVLRKACFAAQKWREQGLF 1256
Query: 1342 DISMAVNLSARQLK-ADIISTIEVALAVSGLPAKALELELTESMIMGNPQESVNILSKLK 1400
+AVNLS+RQ D+ IE L ++ LPA LELE+TE ++ P+ ++ ++ +L
Sbjct: 1257 KGRVAVNLSSRQFALPDLQQRIESILRLTQLPASHLELEITEGTVIKQPEMAITVMQQLA 1316
Query: 1401 ALGLTIAVDDFGTGYSSLSYLKRFPIDTLKIDREFVRDITNDPDDAAITSAIIALAHSLE 1460
+G+++A+DDFGTGYSSLSYLKRFPI TLKID+ FV DI D + +II +AH++
Sbjct: 1317 KMGVSLALDDFGTGYSSLSYLKRFPIHTLKIDKAFVDDIDKSDRDLKMVDSIITIAHNMG 1376
Query: 1461 LNVVAEGVETQEQLNFLALQGCDQVQGFLLSKPLSAQDCQTLLQ 1504
L+VV EGVE QLN L C+++QG++ SK ++ + LLQ
Sbjct: 1377 LSVVGEGVEQAAQLNILRALNCEEIQGYIFSKAINEIEFTQLLQ 1420
Score = 39.7 bits (91), Expect = 2e-06
Identities = 28/108 (25%), Positives = 57/108 (52%), Gaps = 8/108 (7%)
Query: 478 LWVATSHALYRKSSVNDEFTPVPLTGIENFHPIQNL-----LLTLKSDKNILWIGSLNGL 532
L+++T + + S+ + E +P+ + ++F Q L ++ + LWIG+LNGL
Sbjct: 25 LFLSTLISSFSASAFSSETSPIVILQSQSFGVAQGLSQGTVTSIVQDNDGYLWIGTLNGL 84
Query: 533 VKLDMQTGHGEVFYHDPHDKNSIINNRIRDIFVASNGDTWFATHGGIS 580
+ D + + + FY D D + + ++ IR + + NGD + T G++
Sbjct: 85 NRFDGR--NFKHFYADGTD-SGLPSSFIRSLQLDKNGDLYVGTDNGLA 129
Score = 37.0 bits (84), Expect = 2e-05
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 598 QGLPSDTIYALLEDDDNHIWFSSNAGIGKLNPHNGKIINFNEQEGLQALEFNGGVKLKDS 657
QGL T+ ++++D+D ++W + G+ + + N K + + F ++L D
Sbjct: 58 QGLSQGTVTSIVQDNDGYLWIGTLNGLNRFDGRNFKHFYADGTDSGLPSSFIRSLQL-DK 116
Query: 658 DGDLWFGGINGI 669
+GDL+ G NG+
Sbjct: 117 NGDLYVGTDNGL 128