Pairwise Alignments

Query, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 878 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3

 Score =  447 bits (1149), Expect = e-129
 Identities = 247/608 (40%), Positives = 359/608 (59%), Gaps = 3/608 (0%)

Query: 898  LQGRSPFFEVEYRIEHSPGKWVWILERGKVVETNAQERPIRMTGTTRNITSRKLIENELV 957
            ++  +P    E        K +W LE  K+    ++     + G TRNI+  K +E +L 
Sbjct: 269  IEAGTPIIVAECLDGEKQNKHLW-LETLKIPAMTSEGALAGVIGMTRNISKHKEVEEQLT 327

Query: 958  LSSQVLNSMNEAVVVAGLDYRIRSVNPAFSAITGYSEGQISDKFLIHLAYSRQQRDLFNS 1017
            L++ V     E VV+      I  VN AF  ITGYS  ++  +        R ++  F++
Sbjct: 328  LATNVFKHTLEGVVITDRHGNITDVNGAFYEITGYSREELLGQNPRLFNSGRHEKAFFDA 387

Query: 1018 IEQQLLRHKHWAGEIWIRNKARRAILVWLEINQVIDVKGETSHFVAVFTDITERKKAEED 1077
            +   LL    W GEIW R K        + I+ + D  G+  +FVAVF+DI+ +K++E  
Sbjct: 388  MWNHLLETGKWNGEIWNRRKDGTIFPQNITISTIYDELGDVRYFVAVFSDISAQKQSEAQ 447

Query: 1078 LRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGD 1137
            L  LA FD LT LPNR     +L   +  A R N  +A +F+D+D FKHINDS GH IGD
Sbjct: 448  LAHLAYFDPLTHLPNRMKLMMQLKQELRHAKRLNAQLATVFIDVDLFKHINDSFGHSIGD 507

Query: 1138 LLLKAVAHRLQSAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPFLLDD 1197
             +L  +A RL+S ++E D ++R+GGDEF  ++ G+   + A     ++ + F+ PF++  
Sbjct: 508  EMLVELAKRLRSQLQEQDVLSRIGGDEFVALISGIQSHEDAAAAINQLRQVFEQPFVVST 567

Query: 1198 KS-LNISTSIGISLYPNDAKDVDSLIKFADTAMYHAKALGRNNFQFYTNKLNEMATRHMQ 1256
               L ++ S+G+S+YP+D  + D+L++ AD AMY AK+ GRNNF FYT  L + +  H++
Sbjct: 568  GDHLRLTASMGVSIYPDDGSNADTLLRNADAAMYRAKSEGRNNFAFYTESLTKQSFEHLK 627

Query: 1257 LETGLKQAISHNELSLVYQPKFCLRNGSLTGLEALLRWQHSELGPISPAEFIPLAEETGM 1316
            L++ L  A+  N L L+YQPK  L +    G+EALLRW    LG ISP  FIP+AE+ G+
Sbjct: 628  LQSALYGALEQNALYLMYQPKLDLVSRKTIGVEALLRWNDPILGQISPGVFIPVAEKIGL 687

Query: 1317 INQIGHWVINQSCQQLAEWNELGFSDISMAVNLSARQL-KADIISTIEVALAVSGLPAKA 1375
            I  IG WV+  +C Q   W   G     +AVN++ +QL ++  +  ++  L  +GLPA  
Sbjct: 688  IYDIGLWVLETACLQGVRWLTEGKPFGRIAVNVAGQQLQRSSFVEDVKRILTQTGLPATC 747

Query: 1376 LELELTESMIMGNPQESVNILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKIDREF 1435
            LELE+TES++M NP  ++  L  L  LG+ ++VDDFGTGYSSL+YLK+ PI  LKID+ F
Sbjct: 748  LELEVTESVMMHNPDVAIRDLKLLGDLGIELSVDDFGTGYSSLNYLKKLPIHKLKIDQSF 807

Query: 1436 VRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQEQLNFLALQGCDQVQGFLLSKPLS 1495
            VRDI  D ++ AI  A+IAL H+L+L +VAEGVETQ Q  FL    CDQ QG+L S+PL 
Sbjct: 808  VRDIPFDTNNTAIAKAVIALGHALKLEIVAEGVETQAQAEFLTQNLCDQAQGYLFSRPLL 867

Query: 1496 AQDCQTLL 1503
              D +  L
Sbjct: 868  PADVEAFL 875