Pairwise Alignments
Query, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1
Subject, 1487 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3
Score = 535 bits (1377), Expect = e-155
Identities = 435/1549 (28%), Positives = 727/1549 (46%), Gaps = 133/1549 (8%)
Query: 23 IISFFTVPSTGLA-LPLNAANTQLKFEHIRSE-DGLNQNTITSLFMDSAGMLWIGTQDGL 80
II F +PS L L L +A + + ++ DGL +I +L +D G +W T+ GL
Sbjct: 4 IIIHFILPSMLLVCLSLQSAWAGSFVQRVFTDRDGLEATSIRALTLDDHGFVWAATEQGL 63
Query: 81 HSYNGYNFNLFIHSPNDPKSISESYVSDIIQ----------DAEGYLWVGSFSQGINRLD 130
+ + I +++ +++ +I +A YL+ + +Q I
Sbjct: 64 YRVSNSKVRR-IDKTGSELRLADEFLTTVINVDRDMLLLSTNAATYLYDIAKNQFI---- 118
Query: 131 LKTGTFKRFGVEQGLTDPRVTKLNIVGNTLWIGTQSGLFSFSTRTNRLTKVS-LGTSIE- 188
+ G+ F G + N L I ++ FS LT V+ L + +
Sbjct: 119 -QMGSANLFPHFPGGVLLSAARKNTQEWRLLIDNGQ-IYDFSPSKLTLTLVNQLPVNRDL 176
Query: 189 PYITSLANVDNTYLLAGT------KGSGTFAVSANTITRLNIPQDAIAYQVKANSSRAIT 242
P+ L+ D +L+AG G+G V + D + +S + I
Sbjct: 177 PWRKLLSLPDGQFLVAGQFQLLLLNGAGEKVVDYQWTEPMGSILDMLE-----DSKQRIW 231
Query: 243 LALGNQLWHYDLATQQGKALWQADKNIPYIKDFIQTPEGQFWVVGPEAGLIQLEREADKF 302
+A ++ + T Q ++ + + ++ G+ W AGL++ + +
Sbjct: 232 IATSRGVYRLEPKTLQ---IFPVPELPDWSTAMVEGHNGEIWF-SSRAGLLKWSPDTHQI 287
Query: 303 VATYHQYDMKRTNSISENNILSLLEDPFGNLWLGASYSGLNKINTRRQYFQHLFEYTNEL 362
Y + + + ++L D G +W+G S GL + ++ + L YT+E
Sbjct: 288 ----ENYQQELKTQANMETLKAILFDNAGLMWVGGSGDGLALLASQPDFI--LDTYTSEP 341
Query: 363 P--LQSNNVRTIYRSQDQALWIGTEGAGL------KRLAVNSTTFEHYTSFFAKALGQQT 414
P L V +++ S D+ LW G K + V + + S + + Q
Sbjct: 342 PYGLPDPMVWSVFAS-DEGLWFGASNLSFVGKNNQKAVTVEIDGLKAHESIYG--ISQFI 398
Query: 415 QHLNLILRSIVQDKQGILWFASNYGLGRLTPNGEFNLLNVADSRDTSAEANYIRSLELDN 474
+H L+ + + + + +LT G S + + Y ++
Sbjct: 399 EHYLLVSTT-----------SGLFVVDKLTLKGMSFSQWAHGSEEFKNKLIYSTYVDPKL 447
Query: 475 QNRLWVATSHALYRKSSVNDEFTPVPLTGI--ENFHPIQNLLLTL-KSDKNILWIGSLNG 531
+ R W+AT LY E P + G ++ P + + TL ++ LW+G
Sbjct: 448 KGRFWIATGTGLYFWEQGLFEPQPFNIDGSTGDSPEPKRPTIRTLYRASDGKLWLGGRRV 507
Query: 532 LVKLDMQTGHGEVFYHDPHDKNSIINNR--IRDIFVASNGDTWFATHG-GISRLPAQALS 588
+D Q +HD S +++ I I S G WF ++ G+
Sbjct: 508 FGFIDEQN-----LFHDKRGLFSGLSSEPSISHIEEISPGVMWFGSYERGLFEYRLNTAE 562
Query: 589 PIFSDYTREQGLPSDTIYALLEDDDNHIWFSSNAGIGKLNPHNGKIINFNEQEGLQALEF 648
I T + + +++ + + + ++ +++ I + + G I FN+ +GL + E
Sbjct: 563 LI--SLTSQWQVNCSSVFFIQKTTNANVVACADSLI-RQDTSTGHIAMFNQLDGLISNEM 619
Query: 649 NGGVKLKDSDGDLWFGGINGINRFNPKTLPNQRSEARVALTAYKIAGQKQTILDLSHPPQ 708
N G + L+ G G+ + L N+ ++ V L + + T + L P
Sbjct: 620 NEGAYFYSAATGLYIGTPEGVMHIDVDKLSNRITDDHVMLESVSVYYDDNTQVSLLPKPM 679
Query: 709 IVMNYADQLISFEVTSLDFSYPGKNRFSYFL--EGFDNQWHDLPTGNEITFTNIDPGNYL 766
+V+ ++S ++T+LD+ +F Y L +G ++ + L ++I +
Sbjct: 680 MVIKPGANMVSLQITNLDYLDDSPIQFKYRLRYQGEEDNYVLLQGESQINLAGL------ 733
Query: 767 LHVRHSLEYNSKGNYALLVNLTVKAPFYRTPFAYAFYV----------------LFTLVS 810
+ G Y L + V + PFAY FYV +F++++
Sbjct: 734 ----------AAGEYGLEILSQVNGIWSDKPFAYPFYVEQHWWLTQGFKGILLLIFSIIA 783
Query: 811 MGWALRWRKQKRSQQ-QEFETSIRASEERLKLALWASGDGMWDWNIQEQQVYRTNTDIAV 869
+ +L W +Q++ + ++ S++RL+ +L S +W+W+ Q Y N +
Sbjct: 784 L--SLAWYRQRQVRTFMTMNQALTESDDRLRQSLRGSDSDLWEWHRDTQSFYLDNRGAVL 841
Query: 870 PQWNGHQLLHDNA---HPEDRERFKYELTEHLQGRSPFFEVEYRIEHSPGKWVWILERGK 926
++ HPEDR++ + L G FE EYR + G W W+ RG+
Sbjct: 842 GNHANEIVVTLETLPVHPEDRDKALGQWNSMLAGEIDRFEAEYRYQRRSGNWGWLRVRGR 901
Query: 927 VVETNAQERPI-RMTGTTRNITSRKLIENELVLSSQVLNSMNEAVVVAGLDYRIRSVNPA 985
V N I R+ G +IT ++ +E+E+ L +Q + +E V++ +D IR N A
Sbjct: 902 PVSRNRTTHEIERVAGIYSDITLQRQLEDEINLLAQAFENTSEGVLILDVDENIRVANHA 961
Query: 986 FSAITGYSE----GQISDKFLIHLAYSRQQRD-LFNSIEQQLLRHKHWAGEIWIRNKARR 1040
I G + GQ +F+ Q +D L + Q L + W GE + +
Sbjct: 962 AQQIIGSEQHDLVGQSFSQFV-------QMKDGLSTEVHQLLGQDSSWTGERELVGQNGL 1014
Query: 1041 AILVWLEINQVIDVKGETSHFVAVFTDITERKKAEEDLRFLASFDTLTGLPNRTLFQDRL 1100
VWL ++ + + H+V VF+DITERK+ E DLR LA++D LTGLPNR+LF RL
Sbjct: 1015 VCPVWLNVSVMQSASDSSVHYVIVFSDITERKRTEADLRRLANYDVLTGLPNRSLFSSRL 1074
Query: 1101 NHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGDLLLKAVAHRLQSAVREGDTVARL 1160
+I A ++ +ALLFLDLDRFKH+NDS GH +GD LL ++RLQS + + R
Sbjct: 1075 LQSIQTAQQTGEKLALLFLDLDRFKHVNDSYGHSMGDALLVEASNRLQSCIGSEHLLCRF 1134
Query: 1161 GGDEFTIILEGVAKTKAATLISEKVLKAFQAPFLLDDKSLNISTSIGISLYPNDAKDVDS 1220
GGDEF I+L I+E++L APF L + ISTSIGIS++P+DA ++
Sbjct: 1135 GGDEFVILLRNANNLNEINHIAERLLAQIVAPFKLFGREFYISTSIGISIWPDDAVQPEA 1194
Query: 1221 LIKFADTAMYHAKALGRNNFQFYTNKLNEMATRHMQLETGLKQAISHNELSLVYQPKF-C 1279
IK AD AMYHAK GR NF++Y+++ N A H++LE L++AI E L YQP+
Sbjct: 1195 FIKNADLAMYHAKEEGRGNFKYYSSERNAQALYHLRLEADLRKAIEREEFELYYQPQIDI 1254
Query: 1280 LRNGSLTGLEALLRWQHSELGPISPAEFIPLAEETGMINQIGHWVINQSCQQLAEWNELG 1339
LR G+EAL+RW+H + G I P FI +AE G++ +I WV ++C A+W +
Sbjct: 1255 LRGDKFIGMEALIRWRHPKEGYIRPDIFIKVAEACGLVVEIDRWVFRRACLDGAKWVKRC 1314
Query: 1340 FSDISMAVNLSARQLK-ADIISTIEVALAVSGLPAKALELELTESMIMGNPQESVNILSK 1398
+ ++VN+SA + D I ++ LA + +P +L LE+TE ++M Q + + L++
Sbjct: 1315 AAPFKLSVNISAVHFRQPDFIEGLKKILADTQMPTSSLGLEITEGVLMKEVQAAKSHLTQ 1374
Query: 1399 LKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKIDREFVRDITNDPDDAAITSAIIALAHS 1458
LK LG+ +A+DDFGTGYSSL+YL+ F ++TLKIDR F+ DI + D AI S+II LA +
Sbjct: 1375 LKELGIEVAIDDFGTGYSSLAYLRHFDVNTLKIDRSFLIDIATNSADQAIVSSIIELARN 1434
Query: 1459 LELNVVAEGVETQEQLNFLALQGCDQVQGFLLSKPLSAQDCQTLLQQRT 1507
L+L VVAEGVET EQL + +GC VQG+ +KP+S + + L Q+T
Sbjct: 1435 LKLTVVAEGVETVEQLEQVFSRGCYIVQGYYFAKPMSVTEFERYLLQKT 1483