Pairwise Alignments

Query, 484 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 487 a.a., YdiU family protein from Pseudomonas fluorescens SBW25-INTG

 Score =  444 bits (1142), Expect = e-129
 Identities = 240/477 (50%), Positives = 310/477 (64%), Gaps = 15/477 (3%)

Query: 14  FYSQVYPQGISNPHWLAWSDDAAALIGLHQPTDE---LLQGLSGNAAVEGASYYAQVYSG 70
           F + V P+ +  P  +  S  A AL+ L     E     +   G+     A   A VYSG
Sbjct: 20  FSTHVLPEPLDAPRLVVASPAAMALLDLDPSVAETPVFAELFGGHKLWAEAEPRAMVYSG 79

Query: 71  HQFGGYTPRLGDGRSIILGEAIGPNGA-WDVALKGGGPTPYSRHGDGRAVMRSAVREFLV 129
           HQFGGYTP+LGDGR ++LGE     G  WD+ LKG G TPYSR GDGRAV+RS++REFL 
Sbjct: 80  HQFGGYTPQLGDGRGLLLGEVYNEAGEHWDLHLKGAGMTPYSRMGDGRAVLRSSIREFLA 139

Query: 130 SEALHHLGVPTTRALAVIGSDMPVWRESQETAAITVRLARSHIRFGHFEFFSHSERGQAD 189
           SEALH LG+P++RAL VIGSD PVWRE QE  A+ +R+A SHIRFGHFE+F ++++   +
Sbjct: 140 SEALHALGIPSSRALCVIGSDTPVWREKQERGAMVLRMAHSHIRFGHFEYFYYTKK--PE 197

Query: 190 KLTQLLNFTLKQHYPHLSCDPAGYKAWFLQVVQDSAKMIAHWQAIGFAHGVMNTDNMSIL 249
           +  +L    L  HYP     P  Y A F ++V+ +A++IA WQA GF HGVMNTDNMSIL
Sbjct: 198 QQAELAEHVLNLHYPECREQPEPYLAMFREIVERNAELIAKWQAYGFCHGVMNTDNMSIL 257

Query: 250 GDSFDFGPFAFLDTFQEDFICNHSDPDGRYAFGQQPGIGLWNLQRLAQALTPVIASDDLI 309
           G +FDFGPFAFLD F   FICNHSD +GRY+F  Q  IG WNL  LAQALTP I  D L 
Sbjct: 258 GITFDFGPFAFLDDFDAHFICNHSDHEGRYSFSNQVPIGQWNLSALAQALTPFIGVDALK 317

Query: 310 AALNQYQHALVQHYLALMRAKLGLVQQADSSAEQDQQDLELIGRFTVLMEKNQLDYSHTW 369
            AL  Y      +YL LMR +LGL     ++AE D Q  +L+ R   LM+ + +DY+  +
Sbjct: 318 EALGLYLPLYQANYLDLMRRRLGL-----TTAEDDDQ--KLVERLLKLMQSSGVDYTLFF 370

Query: 370 RRFGQLDPSSLHSSLRDDFIDLNEFDAWYQVYQARLGKVTDVEAWQQQC--NRVNPKYIL 427
           RR G    +   + LRDDF+DL  FDAW + Y+AR+ +  D    Q++   + VNP YIL
Sbjct: 371 RRLGDEPAALAVTRLRDDFVDLAGFDAWAEQYKARVERDGDNSEEQRRARMHAVNPLYIL 430

Query: 428 RNYLAQEAIIAVDEGNLAQLQRLHQVLRQPFTEQIEHEELAKRPPDWGQGLIMSCSS 484
           RNYLAQ AI A + G+ ++++RLH+VL +PF EQ   E+ A+RPPDWG+ L +SCSS
Sbjct: 431 RNYLAQNAIAAAESGDYSEVRRLHEVLSKPFEEQAGMEQYAQRPPDWGKHLEISCSS 487