Pairwise Alignments

Query, 786 a.a., hypothetical Fe-S oxidoreductase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 677 a.a., YgiQ family radical SAM protein from Rhodopseudomonas palustris CGA009

 Score =  859 bits (2220), Expect = 0.0
 Identities = 412/657 (62%), Positives = 497/657 (75%), Gaps = 41/657 (6%)

Query: 21  APFLPMSRKEMEKLGWDSCDIIIVTGDAYVDHPSFGMAVIGRMLEAQGYRVGIIAQPDWS 80
           APFLPMSR EM+KLGWD+CDI++VTGDAYVDHPSFGMA+IGR+LE+QG+RVGII+QPDW 
Sbjct: 25  APFLPMSRAEMDKLGWDACDIVLVTGDAYVDHPSFGMAIIGRLLESQGFRVGIISQPDWQ 84

Query: 81  SKDAFMQLGRPNLFFGVTAGNMDSMINRYTADRRIRSDDAYTPGDVGGKRPDRAVTVYTQ 140
           S + F  LG+P +FFGVT GNMDSM+NRYTADRR+R DDAYTP   GGKRPDR   VY Q
Sbjct: 85  SAEPFKALGKPRVFFGVTGGNMDSMVNRYTADRRLRHDDAYTPNGEGGKRPDRCTLVYAQ 144

Query: 141 RCKEAFKDVPVIIGGIEASLRRIAHYDYWSDKVRRSVIFDAKADILMYGNAERPLAEVAR 200
           RC+EAFKDVP+I+GGIEASLRRIAHYDYWSDKVRRSV+ DAKAD+L+YGNAER + EVA 
Sbjct: 145 RCREAFKDVPIILGGIEASLRRIAHYDYWSDKVRRSVLADAKADLLLYGNAERAVIEVAH 204

Query: 201 RLAAGEAIADIQDVRGTAVIRKEPMPEWRGMDSRKIDQLHKIDPIPNPYGADDVGCANLS 260
           RLAAGEA  +++D+RG A+ R+ P             +LH  D       A D G   + 
Sbjct: 205 RLAAGEAPRELEDIRGVALFRRVP---------ENTIELHADD-----LDAADEGARQVR 250

Query: 261 GPSDAKIFDNDAPKPISVQPPRPKPWDKTYVLLPAFEKVSEDKYLYAHASRILHQEQNPG 320
           G                             + LP+ E+V +DK  YA ASR+LH+E NPG
Sbjct: 251 GD--------------------------VVIRLPSCEQVEQDKEAYARASRVLHRESNPG 284

Query: 321 CARALFQPHGDRGVWVNPPAWPLNTDEMDAVFDLPYKRVPHPAYGKEKIPAYDMIKTSIN 380
            AR L Q HGDR +W+NPP  PL T+EMD+V+DLPY R PHP+YG  KIPA+DMIKTS+ 
Sbjct: 285 NARPLVQRHGDRDLWLNPPPIPLTTEEMDSVYDLPYARAPHPSYGNAKIPAWDMIKTSVT 344

Query: 381 IMRGCFGGCSFCSITEHEGRIIQSRSQESIIKEIKDIQDKVPGFTGVISDLGGPTANMYR 440
           IMRGCFGGC+FCSITEHEGRIIQSRS+ SI++EI+ I+DK PGFTGVISD+GGPTANMYR
Sbjct: 345 IMRGCFGGCTFCSITEHEGRIIQSRSEASILQEIEKIRDKTPGFTGVISDIGGPTANMYR 404

Query: 441 LGCTSEKAEKTCRRLSCVYPSICGHLGTDHKHTIDLYRAARAVPGIKKILIASGVRYDLA 500
           + C     E +CR+ SCV+P IC +L T H   I LYR  R V GIK++++ASGVRYDLA
Sbjct: 405 MACKDSNIESSCRKPSCVFPDICPNLNTSHDDLIRLYRKVREVKGIKRVMVASGVRYDLA 464

Query: 501 IEDPAYVKELVQHHVGGYLKIAPEHTEEGPLSKMMKPGMGAYDKFKELFDKFSKEAGKEQ 560
           ++ PAY+KELV HHVGGYLKIAPEHTE GPL KMMKPG+G Y +FK++F+  +K+AGK+ 
Sbjct: 465 VKSPAYIKELVSHHVGGYLKIAPEHTERGPLDKMMKPGIGTYHRFKQMFEAAAKQAGKQY 524

Query: 561 FLIPYFISAHPGTTDEDMLNLALWLKERKFKLDQVQNFYPSPMANATTIYHTELNSLKNV 620
           +LIPYFI+AHPGTTDEDM+NLALWLK  +++ DQVQ F PSPMA AT +YH+ +N L+ V
Sbjct: 525 YLIPYFIAAHPGTTDEDMMNLALWLKRNRYRADQVQTFLPSPMATATAMYHSGVNPLRGV 584

Query: 621 KH-TSEVVPVPKKGRQRRLHKALLRYHDPAGWPIIREGLIAMGREDLIGNSPNHLVP 676
           +H  SE V   K  RQRRLHKA LRYHDP  WP++RE L AMGR DLIG+ P+ LVP
Sbjct: 585 RHGASEPVEAIKGLRQRRLHKAFLRYHDPDNWPVLREALKAMGRADLIGSRPDQLVP 641