Pairwise Alignments

Query, 786 a.a., hypothetical Fe-S oxidoreductase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 771 a.a., Radical SAM domain protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  483 bits (1243), Expect = e-140
 Identities = 305/781 (39%), Positives = 439/781 (56%), Gaps = 73/781 (9%)

Query: 23  FLPMSRKEMEKLGWDSCDIIIVTGDAYVDHPSFGMAVIGRMLEAQGYRVGIIAQPDWSSK 82
           FLP + +EM  LGWD  D+++V+GDAYVDHP+F MA++GR L A G+R GI+AQP W   
Sbjct: 29  FLPTTAREMRDLGWDRLDVLLVSGDAYVDHPTFAMALLGRWLVAHGFRTGIVAQPRWDIP 88

Query: 83  DAFMQLGRPNLFFGVTAGNMDSMINRYTADRRIRSDDAYTPGDVGGKRPDRAVTVYTQRC 142
           D   ++GRP LF G++AG++DSM+  YTA R+ R DDA+TPG   G RP+RA  VY    
Sbjct: 89  DDVARMGRPRLFTGISAGSLDSMLAHYTAFRKKRHDDAFTPGGRAGARPNRAAIVYANLA 148

Query: 143 KEAFKDVPVIIGGIEASLRRIAHYDYWSDKVRRSVIFDAKADILMYGNAERPLAEVARRL 202
           ++AF  +PV++GGIEASLRRI+HYD+W+D +RR ++ DAKAD+L++G  ER L +    L
Sbjct: 149 RQAFPGLPVVLGGIEASLRRISHYDFWTDALRRPILMDAKADLLVWGMGERALLDATCAL 208

Query: 203 -AAGEAI-ADIQD-------------VRGTAVIRKEPMPEWRGMDSRKIDQLHKIDPIPN 247
            AA E + AD  D             + GTA  R   + EW   D+   D   ++     
Sbjct: 209 DAAVETVGADAYDAALLPPLAEIFDGIPGTA--RMGRVTEW---DAAPADDAARVT---- 259

Query: 248 PYGADDVGCANLSGPSDAKIFDNDAPKPISVQPPRPKPWDKTYVLLPAFEKVSEDKYLYA 307
               DD     LS  +D +   + AP  I   PP       + + LP+   ++ED  L  
Sbjct: 260 ---GDDPDADELS--NDGQDEGHTAPGAIPPTPP------ISLMRLPSHAAMAEDPRLLM 308

Query: 308 HASRILHQEQNPGCARALFQPHGD----RGVWVNPPAWPLNTDEMDAVFDLPYKRVPHPA 363
            A+ +L +  + G ARA+ QP  D    R V + PPA PL+ DEMDA++ LP+ R  HP+
Sbjct: 309 RATLLLERHVHRGDARAI-QPVDDTPTARAVLLAPPAPPLSPDEMDALYALPFARRAHPS 367

Query: 364 YGKEKIPAYDMIKTSINIMRGCFGGCSFCSITEHEGRIIQSRSQESIIKEIKDIQDKVPG 423
           + +E +PA +MI+TSI   RGC GGCSFCS+  H+GR I SRS+ S++ E + + D +  
Sbjct: 368 H-REPVPAEEMIRTSITTHRGCGGGCSFCSLALHQGRRIASRSRGSVLDEARRLND-MER 425

Query: 424 FTGVISDLGGPTANMYRLGCTSEKAEKTCRRLSCVYPSICGHLGTDHKHTIDLYRAARAV 483
           F G +SD+GGP+ANM++  CT + A   CRR SC++P +C     D    ++L RA RA 
Sbjct: 426 FNGSVSDVGGPSANMWQARCTLDPAR--CRRASCMHPRVCPGFAVDQSEAVELLRAVRAT 483

Query: 484 PGIKKILIASGVRYDLAIEDPAYVKELVQHHVGGYLKIAPEHTEEGPLSKMMKPGMGAYD 543
           PG++ + +ASGVR+DLA+ D   ++       GG LK+APEH  +G L  M KPG+  ++
Sbjct: 484 PGVRHVRVASGVRFDLALRDADALRAYTMEFTGGQLKVAPEHICDGVLDLMRKPGLAVFE 543

Query: 544 KFKELFDKFSKEAGKEQFLIPYFISAHPGTTDEDMLNLALWLKERKFKLDQVQNFYPSPM 603
           +F   F   S  AGKEQ+++PY +SA PG TD+DM  L+ WL  R +   QVQ F P+P 
Sbjct: 544 RFLTAFADHSTAAGKEQYVVPYLLSAFPGCTDDDMRTLSRWLAARGWSPRQVQCFIPTPG 603

Query: 604 ANATTIYHTELNSLKNVKHTSEVVPVPKKGRQR-RLHKALL---------RYHDPAGWPI 653
             AT ++   ++   N       VPV +    R R H+ L+           H P G P 
Sbjct: 604 TVATAMFFAGIDPEGN------PVPVARTDAARLRQHRILIPDFGLPPAAGGHAP-GAPG 656

Query: 654 IREGLIAMGREDLIGNSPNHLVPPEGRNERGPKWMKDANQGQKALTRFSGNQFDERKGKG 713
            R G  + GR +      +H    +GR +R  +  +   +G  A     G+   ER G G
Sbjct: 657 NRAGGKSGGRPNERSGGQDHR-NHQGRGDRQGRGDRQ-ERGSDADRNRRGH--GERSG-G 711

Query: 714 DAKGKPSASKPKGPKSG---ANAPQSQQPK--TSRPGAKAPFGQSGFKGKAEQGKAGQNK 768
            A G+P    P GP +G   AN  +++  K   SRPG++ P  +   +     GK G  +
Sbjct: 712 KADGRP-GGMPDGPGNGDRNANRNETRNDKRPDSRPGSR-PGSRPDPRNDRRGGKGGGGR 769

Query: 769 A 769
           +
Sbjct: 770 S 770



 Score = 29.3 bits (64), Expect = 8e-04
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 10/60 (16%)

Query: 727 PKSGANAPQSQQPKTSRPGAKAPFGQSGFKGKAEQGKAGQNKAGHQGRAGKASSGRQQAK 786
           P +G +AP +       PG +A  G+SG  G+  +   GQ+   HQGR  +   G +Q +
Sbjct: 645 PAAGGHAPGA-------PGNRAG-GKSG--GRPNERSGGQDHRNHQGRGDRQGRGDRQER 694