Pairwise Alignments

Query, 786 a.a., hypothetical Fe-S oxidoreductase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 680 a.a., radical SAM domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  470 bits (1210), Expect = e-136
 Identities = 281/743 (37%), Positives = 405/743 (54%), Gaps = 98/743 (13%)

Query: 23  FLPMSRKEMEKLGWDSCDIIIVTGDAYVDHPSFGMAVIGRMLEAQGYRVGIIAQPDWSSK 82
           FLPMSR EM  +GWD+ D+++++GDAYVDHP+F  A++GR L A GYR GI+AQP W++ 
Sbjct: 17  FLPMSRAEMHAIGWDALDVLLISGDAYVDHPTFAAALLGRWLVAHGYRTGIVAQPRWNTP 76

Query: 83  DAFMQLGRPNLFFGVTAGNMDSMINRYTADRRIRSDDAYTPGDVGGKRPDRAVTVYTQRC 142
           +  + +GRP LF G+ AG +DSM+  YTA R+ R DDAYTPG   G RP+RAV VYT   
Sbjct: 77  EDVLCMGRPRLFAGIAAGAIDSMLAHYTAFRKKRHDDAYTPGGKAGARPNRAVIVYTNLL 136

Query: 143 KEAFKDVPVIIGGIEASLRRIAHYDYWSDKVRRSVIFDAKADILMYGNAERPLAEVARRL 202
           ++AF  +PV+IGGIEASLRR  HYD+W+D +RRS++ DAKAD+L+YG  E  L E A R 
Sbjct: 137 RQAFAGLPVVIGGIEASLRRATHYDFWTDSLRRSILLDAKADLLVYGMGEYALREAAARY 196

Query: 203 -------AAGEAIADIQDVRGTAVIRKEPMPEWRGMDSRKIDQLHKIDPIPNPYGADDVG 255
                   A  A   +  + GTA         W G +S                      
Sbjct: 197 DAAMNEGGAATAAEALHGIGGTA---------WVGTES---------------------- 225

Query: 256 CANLSGPSDAKIFDNDAPKPISVQPPRPKPWDKTYVLLPAFEKVSEDKYLYAHASRILHQ 315
                          D P+  S+            + LP+ E +S D  L   A+    +
Sbjct: 226 ---------------DMPEGASI------------MRLPSHEDISADVRLLMEATLQQER 258

Query: 316 EQNPGCARALFQPHGDRGVWVNPPAWPLNTDEMDAVFDLPYKRVPHPAYGKEKIPAYDMI 375
             + G A A+ QP G R V + PPA P++++++D ++ LP+ R  HP+Y +E +PA DMI
Sbjct: 259 HVHRGDAWAI-QPVGSRAVIMAPPAPPMSSEDLDRLYALPFTREAHPSY-RETVPAADMI 316

Query: 376 KTSINIMRGCFGGCSFCSITEHEGRIIQSRSQESIIKEIKDIQDKVPGFTGV-ISDLGGP 434
           +TSI   RGC GGCSFCS+  H+GR I SRS++S++ E +D+        GV ISD+GGP
Sbjct: 317 RTSITTHRGCGGGCSFCSLALHQGRRIASRSRDSVLAEARDLA--AAARKGVSISDVGGP 374

Query: 435 TANMYRLGCTSEKAEKTCRRLSCVYPSICGHLGTDHKHTIDLYRAARAVPGIKKILIASG 494
           +ANM++  CT   A+  CRR SC++PS+C     D +  + L R  R  PG++ + +ASG
Sbjct: 375 SANMWQARCTLNPAK--CRRASCMFPSVCKGFAVDQRKAVRLLREVRDTPGVRNVRVASG 432

Query: 495 VRYDLAIEDPAYVKELVQHHVGGYLKIAPEHTEEGPLSKMMKPGMGAYDKFKELFDKFSK 554
           VR+DLA+ +   ++       GG LK+APEH  +  L  M KPG+  ++KF E F  FS 
Sbjct: 433 VRFDLALREGEALRAYTMEFTGGQLKVAPEHICDEVLEYMRKPGLPVFEKFLEAFAAFSD 492

Query: 555 EAGKEQFLIPYFISAHPGTTDEDMLNLALWLKERKFKLDQVQNFYPSPMANATTIYHTEL 614
           EAGKEQ+++PY +SA PG TD+ M  L+ WL+ R +   QVQ F P+P   AT +Y   +
Sbjct: 493 EAGKEQYVVPYLLSAFPGCTDDHMRTLSRWLQARGWSPQQVQCFIPTPGTVATAMYAAGI 552

Query: 615 NSLKNVKHTSEVVPVPKKGRQR-RLHKALLRYHDPAGWPIIREG---LIAMGREDLIGNS 670
           +   N       +PV +   +R R H  L+      G P  R+         R+   G  
Sbjct: 553 DPEGN------PIPVARTDAERLRQHGILM---PDTGRPPSRDADNRRRGDARQSETGR- 602

Query: 671 PNHLVPPEGRNERGPKWMKDANQGQKALTRFSGNQFDERKGKGDA----KGKPSASKPKG 726
                  +GR  R  +   +AN       R  G + D R G+ D     +G+ + ++P G
Sbjct: 603 -GKAGTRDGRPHRSDRDTGNAN-------RHDGGRSDRRGGRRDEDRPDRGRRNGARPDG 654

Query: 727 PKSGANAPQSQQPKTSRPGAKAP 749
             +   A   ++ +  + G+K P
Sbjct: 655 GANRGRADAEERREGRKGGSKRP 677