Pairwise Alignments

Query, 1405 a.a., DNA-directed RNA polymerase, beta' subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1404 a.a., DNA-directed RNA polymerase subunit beta' (RefSeq) from Shewanella amazonensis SB2B

 Score = 2561 bits (6638), Expect = 0.0
 Identities = 1307/1405 (93%), Positives = 1352/1405 (96%), Gaps = 1/1405 (0%)

Query: 1    MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR 60
            MKDLLKFLKQQ KTEEF GIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
Sbjct: 1    MKDLLKFLKQQGKTEEFEGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR 60

Query: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL 120
            IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
Sbjct: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL 120

Query: 121  PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEETYLDALEEYGDEFEAKM 180
            PSRIGLMLDMTLRDIERVLYFES+VVIEPGMTSLERGQMLTEE YLDALEEYGDEFEAKM
Sbjct: 121  PSRIGLMLDMTLRDIERVLYFESYVVIEPGMTSLERGQMLTEENYLDALEEYGDEFEAKM 180

Query: 181  GAEAVLELLRAIDLEKEIEQMREELPSINSETRRKKVTKRLKLMEAFHTSGNKPEWMILK 240
            GAEAVL+LLRAIDLEKEIEQMREELPSINSETRRKKVTKRLKL+EAF+TSGNKPEWMILK
Sbjct: 181  GAEAVLDLLRAIDLEKEIEQMREELPSINSETRRKKVTKRLKLIEAFYTSGNKPEWMILK 240

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300
            VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300

Query: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT 360
            ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
Sbjct: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT 360

Query: 361  LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP 420
            LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP 420

Query: 421  VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
            VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
Sbjct: 421  VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query: 481  RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMYFMSVAEVEKAYATG 540
            RALMMSTNNILSPANGEP+I PSQDVVLGLYY SRER+NGRGE M F SVAE EKAY  G
Sbjct: 481  RALMMSTNNILSPANGEPIIVPSQDVVLGLYYISRERVNGRGEAMAFESVAEAEKAYRVG 540

Query: 541  AAELHARVKVRITETIIDENGERSEQRRIVDTTVGRALLSQILPAGLSFDLVNQNMGKKQ 600
            AAELHARVKVRITETII ENGER++QRRIVDTTVGRA+LSQILPAGLSFDLVNQ+MGKKQ
Sbjct: 541  AAELHARVKVRITETIIGENGERTKQRRIVDTTVGRAILSQILPAGLSFDLVNQDMGKKQ 600

Query: 601  ISKLLNTCYRQLGLKDTVIFADQLMYTGFRYATISGASVGIDDMVIPAEKYTLVADAEAE 660
            ISKLLNTCYRQLGLKDTVIFADQLMYTGF+YATISGASVGI+DMVIP EKY+LVADAEAE
Sbjct: 601  ISKLLNTCYRQLGLKDTVIFADQLMYTGFQYATISGASVGINDMVIPEEKYSLVADAEAE 660

Query: 661  VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVEEKQASFN 720
            V+EIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLS+ETVINR G EEKQ SFN
Sbjct: 661  VIEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSSETVINRHGEEEKQKSFN 720

Query: 721  SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR 780
            SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR
Sbjct: 721  SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR 780

Query: 781  KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVEPLRERVL 840
            KGLADTALKTANSGYLTRRLVDVAQDLV+IEDDCG  EGL+MKPLIEGGDVVEPLRERVL
Sbjct: 781  KGLADTALKTANSGYLTRRLVDVAQDLVIIEDDCGATEGLSMKPLIEGGDVVEPLRERVL 840

Query: 841  GRVVAVDVFYPGTEDVLAPRNTLLDEAWCDKLEEHSIDEVIVRSVITCDTDFGVCAACYG 900
            GRVVA DV YPGT++VLAPRNTLLDEAWCDKLE+HS+DEV VRSVITC+TDFGVCA CYG
Sbjct: 841  GRVVAEDVMYPGTDEVLAPRNTLLDEAWCDKLEQHSVDEVQVRSVITCETDFGVCAKCYG 900

Query: 901  RDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNSGSLKL 960
            RDLARGHIIN GEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAEN+VQVKN+G+LKL
Sbjct: 901  RDLARGHIINMGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKNAGTLKL 960

Query: 961  HNAKYVTNTDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLEKLEEASVEAGDIIANW 1020
            HNAKYVTN+DGKLVIVSRSSELAIIDELGREKERYKVPYGTVL+  E A V AG IIANW
Sbjct: 961  HNAKYVTNSDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLDTKEGAEVNAGQIIANW 1020

Query: 1021 DPHTHPIITEVAGSIKFVDMIDGVTMTRQTDELTGLSSIVILDVGQRGSAGKEMRPMIRL 1080
            DPHTHPIITEVAGSIKFVDMIDGVT+TRQTDELTGLSSIV+LDVGQR SAGKEMRP +RL
Sbjct: 1021 DPHTHPIITEVAGSIKFVDMIDGVTITRQTDELTGLSSIVVLDVGQRTSAGKEMRPAVRL 1080

Query: 1081 VGADGSDLMIPGTEVPAQYFLPGSAIVNLDDNAQIAVGDALARIPQESSKTRDITGGLPR 1140
            V  +G+DL IPGT+VPAQYFLPG+AIVNLDDNA+I+VGDALARIPQESSKTRDITGGLPR
Sbjct: 1081 VDDNGNDLTIPGTDVPAQYFLPGNAIVNLDDNAKISVGDALARIPQESSKTRDITGGLPR 1140

Query: 1141 VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGGEQYEEMIPKWRNLNVFE 1200
            VADLFEAR+PKEPAILAEISGTISFGKETKGKRRLVITP DGG+ YEEMIPKWRNLNVFE
Sbjct: 1141 VADLFEARRPKEPAILAEISGTISFGKETKGKRRLVITPNDGGDAYEEMIPKWRNLNVFE 1200

Query: 1201 GEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM 1260
            GEKVERGEVIADGPE+AHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
Sbjct: 1201 GEKVERGEVIADGPESAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM 1260

Query: 1261 LRKCVITAAGDSEFLEGEQVEVSRVKIANRELVEQGKVPATFERELLGITKASLATESFI 1320
            LRKC+IT AGDSEFLEGEQVEV+RVKIANR+L   GK PA FERELLGITKASLATESFI
Sbjct: 1261 LRKCIITQAGDSEFLEGEQVEVARVKIANRDLEAAGKQPAKFERELLGITKASLATESFI 1320

Query: 1321 SAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTGYAYHKTRNDARAKKDEPV 1380
            SAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTG+AYHK R  ARA  +E  
Sbjct: 1321 SAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTGFAYHKNRAKARASGEE-T 1379

Query: 1381 VVNKITASEAEQNLADLLNLAGSQD 1405
                ITASEAEQNLADLLNLAGSQ+
Sbjct: 1380 AAPTITASEAEQNLADLLNLAGSQE 1404