Pairwise Alignments

Query, 1405 a.a., DNA-directed RNA polymerase, beta' subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1413 a.a., DNA-directed RNA polymerase subunit beta' from Phaeobacter inhibens DSM 17395

 Score = 1641 bits (4249), Expect = 0.0
 Identities = 836/1383 (60%), Positives = 1049/1383 (75%), Gaps = 16/1383 (1%)

Query: 17   FNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCARIFGPVKDYECLCGKYK 76
            F+ IK+ LASP+ I SWS+GE+KKPETINYRTFKPER+GLFCARIFGP+KDYECLCGKYK
Sbjct: 19   FDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECLCGKYK 78

Query: 77   RLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSLPSRIGLMLDMTLRDIE 136
            R+K+RGV+CEKCGVEVT  KVRRERMGHIELASPVAHIWFLKSLPSRIGLMLDMTLRD+E
Sbjct: 79   RMKYRGVVCEKCGVEVTLQKVRRERMGHIELASPVAHIWFLKSLPSRIGLMLDMTLRDLE 138

Query: 137  RVLYFESFVVIEPGMTSLERGQMLTEETYLDALEEYG-DEFEAKMGAEAVLELLRAIDLE 195
            RVLYFE++VVIEPG+T L  GQM+TEE Y+DA +++G D F A +GAEA+ E+L AIDLE
Sbjct: 139  RVLYFENYVVIEPGLTDLTYGQMMTEEEYMDAQDQFGMDAFTANIGAEAIREMLAAIDLE 198

Query: 196  KEIEQMREELPSINSETRRKKVTKRLKLMEAFHTSGNKPEWMILKVLPVLPPDLRPLVPL 255
             E E +R EL     E + KK+ KRLK++E+F  SGN+PEWM++ V+PV+PP+LRPLVPL
Sbjct: 199  AEAEHLRAELAEATGELKPKKIIKRLKVVESFLESGNRPEWMVMTVIPVIPPELRPLVPL 258

Query: 256  DGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQESVDALLDNGRRGRA 315
            DGGRFATSDLNDLYRRVINRNNRLKRL++L APDIIVRNEKRMLQESVDAL DNGRRGR 
Sbjct: 259  DGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRMLQESVDALFDNGRRGRV 318

Query: 316  ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPTLRLHQCGLPKKMALE 375
            ITG+NKRPLKSL+DM+KGKQGRFRQNLLGKRVD+SGRSVI  GP L+LHQCGLPKKMALE
Sbjct: 319  ITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVTGPELKLHQCGLPKKMALE 378

Query: 376  LFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHPVMLNRAPTLHRLGIQ 435
            LFKPFIY +LE +GL++T+K AKK+VE+E  EVWD+LDEVIREHPVMLNRAPTLHRLGIQ
Sbjct: 379  LFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIREHPVMLNRAPTLHRLGIQ 438

Query: 436  AFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPAN 495
            AFEP LIEGKAIQLHPLVC+A+NADFDGDQMAVHVPL+LEAQLEAR LMMSTNN+LSPAN
Sbjct: 439  AFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNVLSPAN 498

Query: 496  GEPVITPSQDVVLGLYYTSRERINGRGEGMYFMSVAEVEKAYATGAAELHARVKVRITET 555
            G P+I PSQD++LGLYY + ER    GEG  F ++ EV+ A   G   LH ++  RIT+ 
Sbjct: 499  GAPIIVPSQDMILGLYYVTLEREGMPGEGKIFGTIDEVQHALDAGEVHLHTKITARITQ- 557

Query: 556  IIDENGERSEQRRIVDTTVGRALLSQILPAGLS--FDLVNQNMGKKQISKLLNTCYRQLG 613
             IDE G  +E  +  +TT GR  L  +LP  +   F+LVN+ + KK++ ++++T YR  G
Sbjct: 558  -IDEEG--NEVLKRFETTPGRVRLGALLPKNVKAPFELVNRLLRKKEVQQVIDTVYRYCG 614

Query: 614  LKDTVIFADQLMYTGFRYATISGASVGIDDMVIPAEKYTLVADAEAEVLEIQEQFQSGLV 673
             K++VIF DQ+M  GFR A  +G S G DDMVIP  K+TLV +   +V + ++Q+  GL+
Sbjct: 615  QKESVIFCDQIMTMGFREAFKAGISFGKDDMVIPDTKWTLVDETRDQVKDFEQQYMDGLI 674

Query: 674  TAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVEEKQASFNSIYMMADSGARGS 733
            T GE+YNKV+D W+  N+KV+ AMM  +S +       V E     NS+YMMA SGARGS
Sbjct: 675  TQGEKYNKVVDAWSKCNDKVTDAMMGTISADKRNEAGAVMEP----NSVYMMAHSGARGS 730

Query: 734  AAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGARKGLADTALKTANS 793
              Q++QL GMRGLMAKP+G IIETPI++NF+EGL VL+YF STHGARKGL+DTALKTANS
Sbjct: 731  VTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGLSDTALKTANS 790

Query: 794  GYLTRRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVEPLRERVLGRVVAVDVFYPGT 853
            GYLTRRLVDVAQD +V + DCGT   +T +  +  G+VV  L ER+LGRV A D+  PGT
Sbjct: 791  GYLTRRLVDVAQDCIVRDRDCGTEAAITAEAAVNDGEVVASLGERILGRVAAEDIKKPGT 850

Query: 854  EDVLAPRNTLLDEAWCDKLEEHSIDEVIVRSVITCDTDFGVCAACYGRDLARGHIINHGE 913
            E+++     L+DE   D +EE  +    +RS +TC+ + GVCA CYGRDLARG  +N GE
Sbjct: 851  EEIIVAVGQLIDERMADAVEEAGVQSTRIRSPLTCEAEEGVCAQCYGRDLARGTQVNTGE 910

Query: 914  AIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNSGSLKLHNAKYVTNTDGKL 973
            A+G++AAQSIGEPGTQLTMRTFHIGG A +   ++ ++    G +     + + N +G+ 
Sbjct: 911  AVGIIAAQSIGEPGTQLTMRTFHIGGVA-QGGQQSFLEASQEGKIVFEMPQTLENANGET 969

Query: 974  VIVSRSSELAIIDELGREKERYKVPYGTVLEKLEEASVEAGDIIANWDPHTHPIITEVAG 1033
            ++V R+ +L I DE G E+  +K+ YG+ L   E  SV  GD +  WDP+T PII E  G
Sbjct: 970  LVVGRNMKLIIQDEHGEERASHKLGYGSKLFVKEGQSVARGDKLFEWDPYTLPIIAEKPG 1029

Query: 1034 SIKFVDMIDGVTMTRQTDELTGLSSIVILDVGQRGSAGKEMRPMIRLVGADGSDLMIPGT 1093
            + K+VD++ G+ +  +TDE TG++  +++D  +    G +++P I LV  DG  +     
Sbjct: 1030 TAKYVDLVSGIAVRDETDEATGMTQKIVID-WRAAPKGSDLKPEIILVDGDGEPVRSDAG 1088

Query: 1094 EVPAQYFLPGSAIVNLDDNAQIAVGDALARIPQESSKTRDITGGLPRVADLFEARKPKEP 1153
              P  Y +   AI+++++  QI  GD +ARIP+E +KT+DITGGLPRVA+LFEAR+PK+ 
Sbjct: 1089 N-PLTYPMSVDAILSVEEGQQIMAGDVVARIPREGAKTKDITGGLPRVAELFEARRPKDH 1147

Query: 1154 AILAEISGTISFGKETKGKRRLVITPADGG-EQYEEMIPKWRNLNVFEGEKVERGEVIAD 1212
            AI+AEI G + FG++ K KRR+ I PAD   E  E M+PK +++ V EG+ V++G+ I D
Sbjct: 1148 AIIAEIDGYVRFGRDYKNKRRISIEPADESMEPVEYMVPKGKHIPVQEGDFVQKGDYIMD 1207

Query: 1213 GPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQMLRKCVITAAGDS 1272
            G  A HDIL + G+  +ANY+++EVQDVYRLQGVKINDKHIEVI+RQML+K  I+ +GD+
Sbjct: 1208 GNPAPHDILSIMGVEALANYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWEISDSGDT 1267

Query: 1273 EFLEGEQVEVSRVKIANRELVEQGKVPATFERELLGITKASLATESFISAASFQETTRVL 1332
              L+GE V+      AN + + +GK PA  E  LLGITKASL T SFISAASFQETTRVL
Sbjct: 1268 TLLKGEHVDKQEFDTANEKALSRGKRPAQGEPILLGITKASLQTRSFISAASFQETTRVL 1327

Query: 1333 TEAAVGGKSDNLRGLKENVIVGRLIPAGTGYAYHKTRNDARAKKDEPVVVNKITASEAEQ 1392
            TEA+V GK D L GLKENVIVGRLIPAGTG A  + RN A+  +D  V+  +   +EA  
Sbjct: 1328 TEASVQGKRDKLVGLKENVIVGRLIPAGTGGATQRVRNIAQG-RDNVVLEARREEAEAAA 1386

Query: 1393 NLA 1395
             LA
Sbjct: 1387 ALA 1389