Pairwise Alignments

Query, 1405 a.a., DNA-directed RNA polymerase, beta' subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1428 a.a., DNA-directed RNA polymerase subunit beta' from Pedobacter sp. GW460-11-11-14-LB5

 Score = 1278 bits (3306), Expect = 0.0
 Identities = 692/1432 (48%), Positives = 940/1432 (65%), Gaps = 106/1432 (7%)

Query: 5    LKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCARIFGP 64
            + + K       F  I I L+SP++I   S GEV KPETINYRT+KPER+GLFC RIFGP
Sbjct: 1    MSYKKDNKLKSNFTSITISLSSPEIILERSSGEVLKPETINYRTYKPERDGLFCERIFGP 60

Query: 65   VKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSLPSRI 124
            VKDYEC CGKYKR++++G++C++CGVEVT+ KVRRERMGHI L  PVAHIW+ +SLP++I
Sbjct: 61   VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIALVVPVAHIWYFRSLPNKI 120

Query: 125  GLMLDMTLRDIERVLYFESFVVIEPGMTSLERG----QMLTEETYLDALEEYGDE----- 175
            G +L +  + ++ ++Y+E +VVI+ G+ + E G      LTEE YLD L++   E     
Sbjct: 121  GYLLGLPTKKLDLIIYYERYVVIQSGLMA-EEGINYMDFLTEEEYLDILDKLPKENQYLD 179

Query: 176  ------FEAKMGAEAVLELLRAIDLEKEIEQMREELPSINSETRRKKVTKRLKLMEAFHT 229
                  F AKMGAEA+ +LL+ IDL+     +R +  +  S+ R+ +  KRL+++EAF  
Sbjct: 180  DKDPNKFIAKMGAEALEDLLKRIDLDTLSYDLRHQAANETSQQRKNEALKRLQVVEAFRG 239

Query: 230  SG----NKPEWMILKVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDL 285
            +     N+PEWMI+K++PV+PP+LRPLVPL+GGRFATSDLNDLYRRVI RNNRLKRL+++
Sbjct: 240  ANTRIENRPEWMIVKIVPVIPPELRPLVPLEGGRFATSDLNDLYRRVIIRNNRLKRLIEI 299

Query: 286  AAPDIIVRNEKRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGK 345
             AP++I+RNEKRMLQE+VD+L DN R+  A+     R LKSL+D++KGKQGRFRQNLLGK
Sbjct: 300  KAPEVILRNEKRMLQEAVDSLFDNSRKVNAVKTEGNRALKSLSDILKGKQGRFRQNLLGK 359

Query: 346  RVDYSGRSVITVGPTLRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREV 405
            RVDYS RSVI VGP+L+LH+CG+PK MA EL+KPFI  K+  RG+  T+K+AKK+V+R+ 
Sbjct: 360  RVDYSARSVIVVGPSLKLHECGIPKDMAAELYKPFIIRKMIERGVVKTVKSAKKIVDRKD 419

Query: 406  AEVWDVLDEVIREHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQ 465
              VWD+L+ V++ HPV+LNRAPTLHRLGIQAF+P LIEGKAIQLHPLVC A+NADFDGDQ
Sbjct: 420  PLVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQ 479

Query: 466  MAVHVPLTLEAQLEARALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERING----- 520
            MAVH+PL   A LEA+ LM++ +NIL+PANG P+  PSQD+VLGLYY ++ R        
Sbjct: 480  MAVHLPLGNAAILEAQVLMLAAHNILNPANGTPITVPSQDMVLGLYYITKGRRTDETRVV 539

Query: 521  RGEGMYFMSVAEVEKAYATGAAELHARVKVRITETIIDENGERSEQRRIVDTTVGRALLS 580
            +G+   F S  EV  AY     +LHA +KVR+      +  + S   ++ +TTVGR L +
Sbjct: 540  KGQDSAFYSPEEVIIAYNEKELDLHAFIKVRVNV----KQADGSIVNKLTETTVGRVLFN 595

Query: 581  QILPAGLSFDLVNQNMGKKQISKLLNTCYRQLGLKDTVIFADQLMYTGFRYATISGASVG 640
            Q++P  + +  +N+ + KK +  ++    +  G+     F D +   GF+ A   G S  
Sbjct: 596  QMVPEEVGY--INELLTKKSLRDIIGEVVKMTGMARASQFLDDIKELGFKMAFQGGLSFN 653

Query: 641  IDDMVIPAEKYTLVADAEAEVLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMEN 700
            + D+ IP EK+TL+  A AEV E++  +  G +T  ERYN++IDIW   N +++  +M  
Sbjct: 654  LQDVNIPVEKHTLLEQAAAEVEEVRNNYNMGFITNNERYNQIIDIWTRINNRLTTFVMTQ 713

Query: 701  LSTETVINRDGVEEKQASFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPD-----GSII 755
            LS++              FNS+YMM DSGARGS  QIRQL GMRGLMAKP      G II
Sbjct: 714  LSSDN-----------QGFNSVYMMLDSGARGSKEQIRQLCGMRGLMAKPQKSGSGGDII 762

Query: 756  ETPIVANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCG 815
            E PI++NF+EGL+VL+YFISTHGARKGLADTALKTA++GYLTRRL DVAQD++V ++DCG
Sbjct: 763  ENPILSNFKEGLSVLEYFISTHGARKGLADTALKTADAGYLTRRLHDVAQDMIVNDNDCG 822

Query: 816  THEGLTMKPLIEGGDVVEPLRERVLGRVVAVDVFYPGTEDVLAPRNTLLDEAWCDKLEEH 875
            T  G+    L +  D+VEPL +R+LGR    DV+ P    +L      ++E     +EE 
Sbjct: 823  TLRGMYTTALKDQEDIVEPLYDRILGRTSLHDVYNPLDNTLLVGAGEDINEDVAKLIEES 882

Query: 876  SIDEVIVRSVITCDTDFGVCAACYGRDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTF 935
             ++ + +RSV+TC++  GVCA CYGR+LA G  +  GEA+GV+AAQSIGEPGTQLT+RTF
Sbjct: 883  PLEGIEIRSVLTCESKRGVCALCYGRNLASGKRVQRGEAVGVIAAQSIGEPGTQLTLRTF 942

Query: 936  HIGGAASRASAENNVQVKNSGSLKLHNAKYV---TNTDGKLVIVSRSSELAIIDE-LGRE 991
            H+GG AS  +AE+N+  K  G ++  N + V   T      V++ RS E  I++   GR 
Sbjct: 943  HVGGTASNIAAESNIVAKFDGVIEFENIRTVDTQTEEGTVQVVLGRSGEFKIVEPGTGRI 1002

Query: 992  KERYKVPYGTVLEKLEEASVEAGDIIANWDPHTHPIITEVAGSIKFVDMIDGVTMTRQTD 1051
                 +PYG  L   E   +  GD I +WDP+   I++E AG  +F  +I+GVT   ++D
Sbjct: 1003 IVTNNIPYGAFLFVKEGDKLSKGDKICSWDPYNAVILSEFAGKAQFDAIIEGVTFREESD 1062

Query: 1052 ELTGLSSIVILDVGQRGSAGKEMRPMIRLVGADGSDLMIPGTEVPAQYFLPGSAIVNLDD 1111
            E TG    VI+D     +  K   P +++V   G   MI G      Y +P  A V++D+
Sbjct: 1063 EQTGHREKVIID-----TRDKTKNPSVQIVDKKGE--MIKG------YNIPVGAHVSVDE 1109

Query: 1112 NAQIAVGDALARIPQESSKTRDITGGLPRVADLFEARKPKEPAILAEISGTISFGKETKG 1171
               I  G  +A+IP+ + KTRDITGGLPRV +LFEAR P  PA++ EI G ++ G   +G
Sbjct: 1110 GEAIQTGQIIAKIPRATGKTRDITGGLPRVTELFEARNPSNPAVVTEIDGVVTLGGVKRG 1169

Query: 1172 KRRLVITPADGGEQYEEMIPKWRNLNVFEGEKVERGEVIADGPEAAHDILRLRGIHNVAN 1231
             R + I   DG E  + ++P  +++ V + + V+ G  ++DG  +  DIL ++G   V  
Sbjct: 1170 NREITIESKDG-EVKKYLVPLSKHILVQDNDFVKAGMPLSDGSISPADILSIKGPAAVQE 1228

Query: 1232 YIVNEVQDVYRLQGVKINDKHIEVIIRQMLRKCVITAAGDSEFLE--------------- 1276
            Y+VN +Q+VYRLQGVKINDKH EVI+ QM++K  I   GD+ FLE               
Sbjct: 1229 YLVNGIQEVYRLQGVKINDKHFEVIVHQMMQKVHIEDPGDTIFLENNAVDRWDFADENDA 1288

Query: 1277 ------------------GEQVEVSRVKIANREL----VEQGKV----PATFERELLGIT 1310
                              G+ V + R++  N +L    ++Q  V    PAT    L GIT
Sbjct: 1289 MYDKKVVEDAGDSTDFKPGQIVSLRRLRDENSQLKRKDLKQITVRDARPATASSILQGIT 1348

Query: 1311 KASLATESFISAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTG 1362
            +ASL T+SFISAASFQETT+VL EAA+ GK DN+ GLKENVIVG LIP+GTG
Sbjct: 1349 RASLGTKSFISAASFQETTKVLNEAAIAGKRDNMLGLKENVIVGHLIPSGTG 1400