Pairwise Alignments

Query, 1405 a.a., DNA-directed RNA polymerase, beta' subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1402 a.a., DNA-directed RNA polymerase, beta'' subunit, predominant form from Dechlorosoma suillum PS

 Score = 1858 bits (4814), Expect = 0.0
 Identities = 928/1380 (67%), Positives = 1128/1380 (81%), Gaps = 3/1380 (0%)

Query: 1    MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR 60
            MK LL   KQ ++ EEF+ I I LASPD IRSWS+GEVKKPETINYRTFKPER+GLFCA+
Sbjct: 1    MKALLDLFKQVTQEEEFDAITISLASPDKIRSWSYGEVKKPETINYRTFKPERDGLFCAK 60

Query: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL 120
            IFGP+KDYECLCGKYKRLKHRGVICEKCGVEVT  KVRRERMGHIELASP AHIWFLKSL
Sbjct: 61   IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL 120

Query: 121  PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEETYLDALEEYGDEFEAKM 180
            PSR+G++LDMTLRDIERVLYFE++VVIEPGMTSL RGQ+LTE+ YL  +EEYGD+F A M
Sbjct: 121  PSRLGMVLDMTLRDIERVLYFEAYVVIEPGMTSLNRGQLLTEDDYLAKVEEYGDDFIALM 180

Query: 181  GAEAVLELLRAIDLEKEIEQMREELPSINSETRRKKVTKRLKLMEAFHTSGNKPEWMILK 240
            GAEAV ELLR +DL+ E+E++R EL +  SE + KK+ KRLK++E F  SG KP+WMIL+
Sbjct: 181  GAEAVRELLRTLDLDHEVERLRSELETTGSEAKNKKIAKRLKILEGFQKSGIKPDWMILE 240

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300
            VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL+L AP+IIVRNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ 300

Query: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT 360
            ESVD+LLDNGRRG+A+TG+NKRPLKSLADMIKGK GRFRQNLLGKRVDYSGRSVI VGP 
Sbjct: 301  ESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ 360

Query: 361  LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP 420
            L+LHQCGLPK MALELFKPFI+ KLE  GLATTIK AKKMVE +   VWD+L++VIREHP
Sbjct: 361  LKLHQCGLPKLMALELFKPFIFHKLELMGLATTIKQAKKMVESQEPVVWDILEDVIREHP 420

Query: 421  VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
            VMLNRAPTLHRLGIQAFEP LIEGKAIQLHPLVCAA+NADFDGDQMAVHVPL+LEAQ+EA
Sbjct: 421  VMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA 480

Query: 481  RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMYFMSVAEVEKAYATG 540
            R LM+++NN+LSPANGEP+I PSQD+VLGLYY +R+RIN +GEGM F  V+EV +A  +G
Sbjct: 481  RTLMLASNNVLSPANGEPIIVPSQDIVLGLYYATRDRINAKGEGMNFADVSEVLRAVNSG 540

Query: 541  AAELHARVKVRITETIIDENGERSEQRRIVDTTVGRALLSQILPAGLSFDLVNQNMGKKQ 600
             A+LHA+V VR+ E +  E+GE  E+    +TT GRA+LS+ILP GL F ++++ + KK+
Sbjct: 541  LADLHAKVSVRLKEYVRGESGEWVEKITRYNTTCGRAILSEILPKGLPFSVIDKALKKKE 600

Query: 601  ISKLLNTCYRQLGLKDTVIFADQLMYTGFRYATISGASVGIDDMVIPAEKYTLVADAEAE 660
            ISKL+NT +R+ GLK+TV+FAD+LM  G+  AT +G S   DDM +P EK+T++A+AE E
Sbjct: 601  ISKLINTSFRRCGLKETVVFADKLMQNGYALATRAGISFCSDDMRVPTEKHTIIAEAEKE 660

Query: 661  VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVEEKQASFN 720
            V EI+ Q+ +GLVT GERYNKV+DIW    ++V+K MME L  E V++R G   KQ SFN
Sbjct: 661  VKEIETQYTNGLVTFGERYNKVVDIWGRTGDQVAKVMMEQLGHEEVVDRHGKTVKQESFN 720

Query: 721  SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR 780
            SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPI  NFREGLNVLQYFISTHGAR
Sbjct: 721  SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITTNFREGLNVLQYFISTHGAR 780

Query: 781  KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVEPLRERVL 840
            KGLADTALKTANSGYLTRRLVDV QDLVV EDDCGT  G+TMK LIEGG+V+EPLR+R+L
Sbjct: 781  KGLADTALKTANSGYLTRRLVDVTQDLVVTEDDCGTQNGVTMKALIEGGEVIEPLRDRIL 840

Query: 841  GRVVAVDVFYPGTEDVLAPRNTLLDEAWCDKLEEHSIDEVIVRSVITCDTDFGVCAACYG 900
            GRVV  DV  P +E+ +    TL+DE  CD +++  IDEV VR+ +TCDT +G+CA CYG
Sbjct: 841  GRVVVADVVNPESEETVIEAGTLVDEDLCDLIDKLGIDEVKVRTPLTCDTRYGLCAKCYG 900

Query: 901  RDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNSGSLKL 960
            RDL RG ++N GEA+GV+AAQSIGEPGTQLTMRTFH+GGAASRA+  + V  K++G ++ 
Sbjct: 901  RDLGRGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHVGGAASRAAVADRVDTKSNGVVRF 960

Query: 961  -HNAKYVTNTDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLEKLEEASVEAGDIIAN 1019
                +YVTN  G+ ++ +RS E+ + D+ GRE+ER+KVPYG +L   +   V+AG ++A 
Sbjct: 961  TATMRYVTNVKGEKIVFTRSGEVLVTDDNGRERERHKVPYGAILTADDGQVVKAGAVLAT 1020

Query: 1020 WDPHTHPIITEVAGSIKFVDMIDGVTMTRQTDELTGLSSIVILDVGQRGSA-GKEMRPMI 1078
            WDPHT P+ITE AG+IKF ++ +G T+ +Q D++TGLS++V++D  + G A  K +RP +
Sbjct: 1021 WDPHTRPMITEYAGTIKFENVEEGSTVAKQIDDVTGLSTLVVIDPKRGGKAQAKGLRPQV 1080

Query: 1079 RLVGADGSDLMIPGTEVPAQYFLPGSAIVNLDDNAQIAVGDALARIPQESSKTRDITGGL 1138
            +L+  +G ++ + GTE          +I+ + D  Q+ VGD LA+IPQES+KTRDITGGL
Sbjct: 1081 KLLDENGQEVKMHGTEHAVTITFQVGSIITVADGQQVGVGDVLAKIPQESAKTRDITGGL 1140

Query: 1139 PRVADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGGEQYEEMIPKWRNLNV 1198
            PRVA+LFEAR PK+  +LAE +GT+SFGK+TKGK+RLVIT  D G  +E +I K +++ V
Sbjct: 1141 PRVAELFEARTPKDVGMLAEYTGTVSFGKDTKGKQRLVITDLD-GVAHEYLILKDKHVMV 1199

Query: 1199 FEGEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIR 1258
             +G+ V +GEVI DG    H+IL+L+G+  +A YI +EVQDVYRLQGVKINDKHIEVI+R
Sbjct: 1200 HDGQVVNKGEVIVDGEPDPHEILKLKGVEALARYITDEVQDVYRLQGVKINDKHIEVIVR 1259

Query: 1259 QMLRKCVITAAGDSEFLEGEQVEVSRVKIANRELVEQGKVPATFERELLGITKASLATES 1318
            QMLR+  IT  GD+ F++ EQVE + V   N  +V +GK+PA+++  LLGITKASL+T+S
Sbjct: 1260 QMLRRVTITEPGDTRFIKSEQVERADVLDENDRVVAEGKLPASYDYMLLGITKASLSTDS 1319

Query: 1319 FISAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTGYAYHKTRNDARAKKDE 1378
            FISAASFQETTRVLTEAA+ GK D LRGLKENVIVGRLIPAGTG AYH +R    A  D+
Sbjct: 1320 FISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHNSRRQQAAGNDQ 1379