Pairwise Alignments

Query, 1405 a.a., DNA-directed RNA polymerase, beta' subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1385 a.a., DNA-directed RNA polymerase, beta' subunit (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 1604 bits (4154), Expect = 0.0
 Identities = 795/1346 (59%), Positives = 1033/1346 (76%), Gaps = 21/1346 (1%)

Query: 20   IKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCARIFGPVKDYECLCGKYKRLK 79
            I+I +A+P+ IR WS+GEVKKPETINYRTFKPER+GLFCA+IFGPVKDYEC CGKYKR+K
Sbjct: 25   IQISIAAPESIREWSYGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECNCGKYKRMK 84

Query: 80   HRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSLPSRIGLMLDMTLRDIERVL 139
            HRG++CEKCGVEV  +KVRRERMGHIELA+PVAHIWFLK+LPS+IG +LDMT+ D+E+VL
Sbjct: 85   HRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIWFLKTLPSKIGTLLDMTMADLEKVL 144

Query: 140  YFESFVVIEPGMTSLERGQMLTEETYLDALEEYG-DEFEAKMGAEAVLELLRAIDLEKEI 198
            YF+S++V++PG T+L + Q+++E+ YL  ++ YG D     MGAEAV  LL  ++LE+  
Sbjct: 145  YFDSYIVLDPGSTNLAKMQVISEDQYLQVIDHYGEDALVVGMGAEAVRSLLEELNLEELR 204

Query: 199  EQMREELPSINSETRRKKVTKRLKLMEAFHTSGNKPEWMILKVLPVLPPDLRPLVPLDGG 258
              +REE  +  S+T++KK+TKRLK++EAF  S NKPEWM+++V+PV+PP+LRPLVPLDGG
Sbjct: 205  AMLREESQATKSQTKKKKLTKRLKIVEAFLESANKPEWMVMEVIPVIPPELRPLVPLDGG 264

Query: 259  RFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQESVDALLDNGRRGRAITG 318
            RFATSDLNDLYRRVINRNNRLKRL++L APDII+RNEKRMLQE+VDAL DNGRRGRAITG
Sbjct: 265  RFATSDLNDLYRRVINRNNRLKRLMELGAPDIIIRNEKRMLQEAVDALFDNGRRGRAITG 324

Query: 319  SNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPTLRLHQCGLPKKMALELFK 378
            +N RPLKSL+DMIKGKQGRFRQNLLGKRVDYSGRSVI VGP L+LHQCGLPKKMALELFK
Sbjct: 325  TNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKLHQCGLPKKMALELFK 384

Query: 379  PFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHPVMLNRAPTLHRLGIQAFE 438
            PFIY +LE RGLA+TIK+AKKMVERE   VWD+L+EV+RE+P++LNRAPTLHRLGIQAFE
Sbjct: 385  PFIYSELEKRGLASTIKSAKKMVEREELVVWDILEEVVREYPILLNRAPTLHRLGIQAFE 444

Query: 439  PVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEP 498
            P+L+EGKAIQLHPLVC+AYNADFDGDQMAVHVPL++EAQ+E R LMMSTNNILSPANG P
Sbjct: 445  PLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSVEAQIECRVLMMSTNNILSPANGSP 504

Query: 499  VITPSQDVVLGLYYTSRERINGRGEGMYFMSVAEVEKAYATGAAELHARVKVRITETIID 558
            VI PSQD+VLGLYY + ER   +GEGM F +  EV  AY +G+  LHARVKVR+      
Sbjct: 505  VIVPSQDIVLGLYYMTVERSFEKGEGMAFCAPWEVVAAYDSGSVSLHARVKVRM------ 558

Query: 559  ENGERSEQRRIVDTTVGRALLSQILPAGLSFDLVNQNMGKKQISKLLNTCYRQLGLKDTV 618
                  E  + VDTT GR L+ ++LP G+ F+ VN  + KK I++L+   YR  G K  V
Sbjct: 559  ------EDGKTVDTTPGRILVWEVLPKGVDFEFVNCTLTKKNIARLVGAAYRDAGTKAAV 612

Query: 619  IFADQLMYTGFRYATISGASVGIDDMVIPAEKYTLVADAEAEVLEIQEQFQSGLVTAGER 678
            I  D+L   G+ YAT +G ++G+ D+ IP++K  ++  ++ EV +I+ Q++ G++T  E+
Sbjct: 613  ILCDRLKDVGYEYATRAGITIGVKDLRIPSKKKAMLEASQNEVDDIERQYRDGIITRTEK 672

Query: 679  YNKVIDIWASANEKVSKAMMENLSTETVIN-RDGVEEKQASFNSIYMMADSGARGSAAQI 737
            YNKV+D+W  A + +S  M + +S + +++ + G +E  +SFN I+MM+ SGARG+  Q+
Sbjct: 673  YNKVVDVWTKATQDISNEMTKEISHDILVDPKTGKQEVNSSFNPIFMMSTSGARGNQDQM 732

Query: 738  RQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGARKGLADTALKTANSGYLT 797
            RQLAGMRGLMAKP G IIETPI ++FREGL+VLQYF STHGARKGLADTALKTANSGYLT
Sbjct: 733  RQLAGMRGLMAKPSGEIIETPITSSFREGLDVLQYFNSTHGARKGLADTALKTANSGYLT 792

Query: 798  RRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVEPLRERVLGRVVAVDVFYPGTEDVL 857
            RRLVDV QD++V E DCGT +G+ +   ++GGD+   L +RVLGRV+   VF P T ++L
Sbjct: 793  RRLVDVVQDVIVSELDCGTVDGIEIGHFVKGGDIKVRLADRVLGRVLLYPVFDPETRELL 852

Query: 858  APRNTLLDEAWCDKLEEHSIDEVIVRSVITCDTDFGVCAACYGRDLARGHIINHGEAIGV 917
             P NTL+DE     LE   I  V +RS +TC ++ GVCA CYGRDLARGH++N GE +G+
Sbjct: 853  FPENTLIDENVAQTLEATGISTVTIRSALTCQSERGVCARCYGRDLARGHLVNIGETVGI 912

Query: 918  VAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNSGSLKLHNAKYVTNTDGKLVIVS 977
            +AAQSIGEPGTQLTMRTFHIGG ASR    +++  ++ G + L   K V N DG+++++ 
Sbjct: 913  IAAQSIGEPGTQLTMRTFHIGGTASREIERSSIVSQHPGRVILSRVKAVRNRDGQMMVLG 972

Query: 978  RSSELAIIDELGREKERYKVPYGTVLEKLEEASVEAGDIIANWDPHTHPIITEVAGSIKF 1037
            +S ++AI+D+ GRE+E+Y +P G+ L   + + ++ G I+A WDP   P ++EV G++KF
Sbjct: 973  KSGQIAIVDDQGREREKYILPNGSRLNVADGSEIKKGVILAEWDPFNEPFVSEVEGTVKF 1032

Query: 1038 VDMIDGVTMTRQTDELTGLSSIVILDVGQRGSAGKEMRPMIRLVGADGSDLMIPGTEVPA 1097
             D+I+G T   + D+ T +++  I++           RP I +   +G D  I    +PA
Sbjct: 1033 TDIIEGKTYQEKMDDATRMTTQSIIEY-----RTTNFRPSISICDENG-DPKIRSGNLPA 1086

Query: 1098 QYFLPGSAIVNLDDNAQIAVGDALARIPQESSKTRDITGGLPRVADLFEARKPKEPAILA 1157
             Y LP  A++ +    ++  GD +AR P+ESSKT+DI GGLPRVA+LFE RKPK+ A+++
Sbjct: 1087 TYSLPVGALIMVKAGQEVQAGDIIARKPRESSKTKDIVGGLPRVAELFEVRKPKDMAVVS 1146

Query: 1158 EISGTISFGKETKGKRRLVITPADGGEQYEEMIPKWRNLNVFEGEKVERGEVIADGPEAA 1217
            EI GT++F  ETKGKR+LV+TP + GE  E ++PK +++ V +G+ VE GE++ +G    
Sbjct: 1147 EIDGTVTFAGETKGKRKLVVTP-ETGEAKEYLVPKGKHITVSDGDFVEAGELLTEGHPEL 1205

Query: 1218 HDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQMLRKCVITAAGDSEFLEG 1277
            HDILR +G   +A Y+V+E+Q+VYR QGV I+DKHIEVI+RQMLRK  +   G + FL G
Sbjct: 1206 HDILRTKGEKFLARYLVDEIQEVYRFQGVGIDDKHIEVIVRQMLRKITVLDPGGTSFLVG 1265

Query: 1278 EQVEVSRVKIANRELVEQGKVPATFERELLGITKASLATESFISAASFQETTRVLTEAAV 1337
            EQV+    +  N   + +G+ PAT E  +LGIT+ASL T SFISAASFQETT+VLTEA++
Sbjct: 1266 EQVDKGEFRHENSRAMGEGRTPATAEPLVLGITQASLTTSSFISAASFQETTKVLTEASL 1325

Query: 1338 GGKSDNLRGLKENVIVGRLIPAGTGY 1363
             GK D LRGLKENVIVGRLIPAGTGY
Sbjct: 1326 RGKMDYLRGLKENVIVGRLIPAGTGY 1351