Pairwise Alignments

Query, 1405 a.a., DNA-directed RNA polymerase, beta' subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1409 a.a., DNA-directed RNA polymerase subunit beta' from Ralstonia sp. UNC404CL21Col

 Score = 1835 bits (4752), Expect = 0.0
 Identities = 925/1411 (65%), Positives = 1138/1411 (80%), Gaps = 14/1411 (0%)

Query: 1    MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR 60
            MK LL   +Q  + E+F+ IKIGLASP+ IRSWSFGEVKKPETINYRTFKPER+GLFCA+
Sbjct: 1    MKALLDLFRQVQQEEQFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60

Query: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL 120
            IFGP+KDYECLCGKYKRLKHRGVICEKCGVEVT  KVRRERMGHIELA+P AHIWFLKSL
Sbjct: 61   IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELAAPTAHIWFLKSL 120

Query: 121  PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEETYLDALEEYGD-EFEAK 179
            PSR+G++LDMTLRDIERVLYFE+FVV+EPGMT+L++ Q+++E+ YL   +EYG+ EF A 
Sbjct: 121  PSRLGMVLDMTLRDIERVLYFEAFVVVEPGMTALKKSQIMSEDDYLAKCDEYGEGEFVAM 180

Query: 180  MGAEAVLELLRAIDLEKEIEQMREELPSINSETRRKKVTKRLKLMEAFHTSGNKPEWMIL 239
            MGAE + ELLR ID+EK+IE +R EL +  SE + KK  KRLK++EAF  SG KP+WMIL
Sbjct: 181  MGAEGIRELLRGIDIEKQIETIRAELQATGSEAKIKKFAKRLKVLEAFQRSGIKPDWMIL 240

Query: 240  KVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRML 299
            +VLPVLPP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL+L AP+IIVRNEKRML
Sbjct: 241  EVLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRML 300

Query: 300  QESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359
            QE+VD+LLDNGRRG+A+TG+NKRPLKSLA+MIKGK GRFRQNLLGKRVDYSGRSVI VGP
Sbjct: 301  QEAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGP 360

Query: 360  TLRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREH 419
            TL+LHQCGLPK MALELFKPFI+ KLE  G+ATTIKAAKK VE +   VWD+L+EVIREH
Sbjct: 361  TLKLHQCGLPKLMALELFKPFIFHKLETMGIATTIKAAKKEVESQTPVVWDILEEVIREH 420

Query: 420  PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479
            PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAA+NADFDGDQMAVHVPL+LEAQ+E
Sbjct: 421  PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQME 480

Query: 480  ARALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMYFMSVAEVEKAYAT 539
            AR LM+++NN+L PANG+P I PSQDVVLGLYYT+R++ING+GEGM F  ++EV +AY  
Sbjct: 481  ARTLMLASNNVLFPANGDPSIVPSQDVVLGLYYTTRDKINGKGEGMTFADISEVIRAYEN 540

Query: 540  GAAELHARVKVRITETII-----DENGERSEQRRIVDTTVGRALLSQILPAGLSFDLVNQ 594
               EL +RV VRITE  +     D +   + +  +  TTVGRA+LS+ILP GL F ++N+
Sbjct: 541  KEVELASRVNVRITEYELVNPEADGDARFAPKITLQSTTVGRAILSEILPKGLPFSVLNK 600

Query: 595  NMGKKQISKLLNTCYRQLGLKDTVIFADQLMYTGFRYATISGASVGIDDMVIPAEKYTLV 654
             + KK+IS+L+NT +R+ GL++TVIFAD+L+ +GFR AT +G S+ IDDM++P  K  ++
Sbjct: 601  PLKKKEISRLINTAFRKCGLRETVIFADKLLQSGFRLATRAGISIAIDDMLVPPAKEKII 660

Query: 655  ADAEAEVLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVEE 714
            ++A A+V E  +Q+ SGLVT  ERYN V+DIW +A ++V KAMME L TE V++R+G   
Sbjct: 661  SEAAAKVKEYDKQYMSGLVTDQERYNNVVDIWGAAGDQVGKAMMEQLQTEDVVDRNGNTV 720

Query: 715  KQASFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFI 774
            KQ SFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPI ANFREGLNVLQYFI
Sbjct: 721  KQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFI 780

Query: 775  STHGARKGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVEP 834
            STHGARKGLADTALKTANSGYLTRRLVDV QDLVV+EDDCGT  G+ MK L+EGG+V+E 
Sbjct: 781  STHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVIEA 840

Query: 835  LRERVLGRVVAVDVFYPGTEDVLAPRNTLLDEAWCDKLEEHSIDEVIVRSVITCDTDFGV 894
            LR+R+LGRVV  DV  P T++      TLLDE   D ++   +DEV VR+ ++CDT +G+
Sbjct: 841  LRDRILGRVVVNDVVNPETQETAIEAGTLLDEDMVDLIDALGVDEVKVRTPLSCDTRYGL 900

Query: 895  CAACYGRDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKN 954
            CA CYGRDL RG ++N GEA+GV+AAQSIGEPGTQLTMRTFHIGGAASRA+  ++V+ K 
Sbjct: 901  CAKCYGRDLGRGVLVNSGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKA 960

Query: 955  SGSLKL-HNAKYVTNTDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLEKLEEASVEA 1013
            +G+++     +YVTN  G+ +++SRS E  I D+ GRE+ER+K+ YG  L   +  S++A
Sbjct: 961  TGTVRFTATMRYVTNAKGEQIVISRSGEALITDDHGRERERHKITYGATLLVKDGQSIKA 1020

Query: 1014 GDIIANWDPHTHPIITEVAGSIKFVDMIDGVTMTRQTDELTGLSSIVILDVGQRGSAGKE 1073
            G  +A WDP T PII+E +G+IKF ++ +GVT+ +Q DE+TGLS++V++D  +R +A K 
Sbjct: 1021 GTQLATWDPLTRPIISEYSGTIKFENVEEGVTVAKQMDEVTGLSTLVVIDAKRRTAATKG 1080

Query: 1074 MRPMIRLVGADGSDLMIPGTEVPAQYFLPGSAIVNLDDNAQIAVGDALARIPQESSKTRD 1133
            +RP ++L+ + G+++ IPGT+          A++ + D  Q+ VG+ LARIP ES KTRD
Sbjct: 1081 IRPQVKLLDSSGAEVKIPGTDHSVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRD 1140

Query: 1134 ITGGLPRVADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGGEQYEEMIPKW 1193
            ITGGLPRVA+LFEAR PK+ A+LAE++GT+SFGK+TKGK+RLVIT  D G  +E +I K 
Sbjct: 1141 ITGGLPRVAELFEARSPKDAAVLAEVTGTVSFGKDTKGKQRLVITDLD-GNAHEFLIAKE 1199

Query: 1194 RNLNVFEGEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHI 1253
            + + V +G+ V +GE+I +GP   HDILRL+G+  +A YIV+EVQDVYRLQGVKINDKHI
Sbjct: 1200 KQVLVHDGQVVNKGEMIVEGPADPHDILRLKGVEELATYIVDEVQDVYRLQGVKINDKHI 1259

Query: 1254 EVIIRQMLRKCVITAAGDSEFLEGEQVEVSRVKIANRELVEQGKVPATFERELLGITKAS 1313
            EVI+RQMLR+  I   GD+ F+ GEQVE S +   N +++  GK PAT+E  LLGITKAS
Sbjct: 1260 EVIVRQMLRRVQIVDTGDTRFIPGEQVERSDLLDENDKVIALGKRPATYENLLLGITKAS 1319

Query: 1314 LATESFISAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTGYAYHKTRNDAR 1373
            L+T+SFISAASFQETTRVLTEAA+ GK D+LRGLKENVIVGRLIPAGTG AYH      R
Sbjct: 1320 LSTDSFISAASFQETTRVLTEAAIMGKVDDLRGLKENVIVGRLIPAGTGLAYH------R 1373

Query: 1374 AKKDEPVVVNKITASEAEQNLADLLNLAGSQ 1404
            A+K + V      A+ AE+  A +      Q
Sbjct: 1374 ARKAKEVADRDRAAAIAEEEAASIFETPAVQ 1404