Pairwise Alignments

Query, 1405 a.a., DNA-directed RNA polymerase, beta' subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1412 a.a., DNA-directed RNA polymerase subunit beta' from Paraburkholderia bryophila 376MFSha3.1

 Score = 1858 bits (4812), Expect = 0.0
 Identities = 931/1378 (67%), Positives = 1133/1378 (82%), Gaps = 12/1378 (0%)

Query: 1    MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR 60
            MK LL   KQ  + E F+ IKIGLASPD IRSWSFGEVKKPETINYRTFKPER+GLFCA+
Sbjct: 1    MKALLDLFKQVQQPEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60

Query: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL 120
            IFGP+KDYECLCGKYKRLKHRGVICEKCGVEVT  KVRRERMGHIELASPVAHIWFLKSL
Sbjct: 61   IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL 120

Query: 121  PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEETYLDALEEYGDEFEAKM 180
            PSR+G++LDMTLRDIERVLYFE++VVI+PGMT L+  Q++TEE Y + +EEYGDEF A+M
Sbjct: 121  PSRLGMVLDMTLRDIERVLYFEAYVVIDPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM 180

Query: 181  GAEAVLELLRAIDLEKEIEQMREELPSINSETRRKKVTKRLKLMEAFHTSGNKPEWMILK 240
            GAE V ELLRAI++++++E +R EL +  SE + KK  KRLK++EAF  SG KP+WM+L+
Sbjct: 181  GAEGVRELLRAINIDEQVEMLRTELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPDWMVLE 240

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300
            VLPVLPP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL+L AP+IIVRNEKRMLQ
Sbjct: 241  VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ 300

Query: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT 360
            E+VD+LLDNGRRG+A+TG+NKRPLKSLADMIKGK GRFRQNLLGKRVDYSGRSVI VGPT
Sbjct: 301  EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT 360

Query: 361  LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP 420
            L+LHQCGLPK MALELFKPFI+ KLE  G+ATTIKAAKK VE +   VWD+L+EVIREHP
Sbjct: 361  LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHP 420

Query: 421  VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
            VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAA+NADFDGDQMAVHVPL+LEAQ+EA
Sbjct: 421  VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA 480

Query: 481  RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMYFMSVAEVEKAYATG 540
            R LM+++NN+L PANG+P I PSQD+VLGLYY +RE +N +GEG+ F  V+E  +AY   
Sbjct: 481  RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAVNAKGEGLTFTGVSEALRAYENK 540

Query: 541  AAELHARVKVRITETIIDENGERSE-------QRRIVDTTVGRALLSQILPAGLSFDLVN 593
              EL +RV VRITE +   N ++SE       +  +  TTVGRA+LS+ILP GL F ++N
Sbjct: 541  EVELASRVNVRITEMV--HNEDKSEGAPAFVPKISLYATTVGRAILSEILPPGLPFSVLN 598

Query: 594  QNMGKKQISKLLNTCYRQLGLKDTVIFADQLMYTGFRYATISGASVGIDDMVIPAEKYTL 653
            + + KK+IS+L+NT +R+ GL++TVIFADQLM +GFR AT +G S+ +DDM++P +K T+
Sbjct: 599  KPLKKKEISRLINTAFRKCGLRETVIFADQLMQSGFRLATRAGISICVDDMLVPPQKETI 658

Query: 654  VADAEAEVLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVE 713
            V DA  +V E   Q+ SGLVT+ ERYN V+DIW++ +E V KAMME LSTE V++RDG E
Sbjct: 659  VGDAAKKVKEYDRQYMSGLVTSQERYNNVVDIWSATSEAVGKAMMEQLSTEPVVDRDGNE 718

Query: 714  EKQASFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYF 773
             +Q SFNSIYMMADSGARGSA QIRQLAGMRGLMAKPDGSIIETPI ANFREGLNVLQYF
Sbjct: 719  TRQESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYF 778

Query: 774  ISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVE 833
            ISTHGARKGLADTALKTANSGYLTRRLVDV QDLVV+EDDCGT  G+ MK L+EGG+VVE
Sbjct: 779  ISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVE 838

Query: 834  PLRERVLGRVVAVDVFYPGTEDVLAPRNTLLDEAWCDKLEEHSIDEVIVRSVITCDTDFG 893
             LR+R+LGRV   DV  P +++ L    +LLDE   +++E   IDEV VR+ +TC+T +G
Sbjct: 839  ALRDRILGRVAVADVVNPESQETLYEAGSLLDEDAVEEIERLGIDEVRVRTPLTCETRYG 898

Query: 894  VCAACYGRDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVK 953
            +CAACYGRDL RG ++N GEA+GV+AAQSIGEPGTQLTMRTFHIGGAASRA+  ++V+ K
Sbjct: 899  LCAACYGRDLGRGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAK 958

Query: 954  NSGSLKLHNA-KYVTNTDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLEKLEEASVE 1012
            ++G+++  +  +YVTN  G+ +++SRS E  I D+ GRE+ER+KVPYG  L +L+ A ++
Sbjct: 959  SNGTVRFTSTMRYVTNAKGEQIVISRSGEAMITDDHGRERERHKVPYGATLLQLDGAQIK 1018

Query: 1013 AGDIIANWDPHTHPIITEVAGSIKFVDMIDGVTMTRQTDELTGLSSIVILDVGQRGS-AG 1071
            AG  +A WDP T PIITE  G++KF ++ +GVT+ +Q D++TGLS++V++DV +RGS A 
Sbjct: 1019 AGTQLATWDPMTRPIITEYGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQAS 1078

Query: 1072 KEMRPMIRLVGADGSDLMIPGTEVPAQYFLPGSAIVNLDDNAQIAVGDALARIPQESSKT 1131
            K +RP ++L+ A+G ++ IP TE   Q      A++ + D  Q+ VG+ LARIP ES KT
Sbjct: 1079 KTVRPQVKLLDANGEEVKIPNTEHSVQIGFQVGALITVKDGQQVQVGEVLARIPTESQKT 1138

Query: 1132 RDITGGLPRVADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGGEQYEEMIP 1191
            RDITGGLPRVA+LFEAR PK+  ILAE++GT SFGK+TKGK+RLVIT  + G Q+E +I 
Sbjct: 1139 RDITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVITDLE-GNQHEFLIA 1197

Query: 1192 KWRNLNVFEGEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDK 1251
            K + + V +G+ V +GE+I DGP   HDILRL+G+  ++ YIV+EVQDVYRLQGVKINDK
Sbjct: 1198 KEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQGVEALSRYIVDEVQDVYRLQGVKINDK 1257

Query: 1252 HIEVIIRQMLRKCVITAAGDSEFLEGEQVEVSRVKIANRELVEQGKVPATFERELLGITK 1311
            HIEVI+RQMLR+  IT  GD+ F+ GEQVE S +   N  ++ + K PAT+E  LLGITK
Sbjct: 1258 HIEVIVRQMLRRVQITDNGDTRFIPGEQVERSDMLDENDRMIAEDKRPATYENVLLGITK 1317

Query: 1312 ASLATESFISAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTGYAYHKTR 1369
            ASL+T+SFISAASFQETTRVLTEAA+ GK D+LRGLKENVIVGRLIPAGTG A+HK R
Sbjct: 1318 ASLSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKAR 1375