Pairwise Alignments

Query, 183 a.a., transcription antitermination protein NusG (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 185 a.a., Transcription antitermination protein NusG from Xanthomonas campestris pv. campestris strain 8004

 Score =  244 bits (622), Expect = 8e-70
 Identities = 119/184 (64%), Positives = 148/184 (80%), Gaps = 9/184 (4%)

Query: 9   KRWYVVQAFSGYEGRVCKSLIEYIKMHGMEQYFGEVLVPTEEVIEMRAGQRRKSERKFFP 68
           KRWYVV A+SG+E  V ++L + I    ME+ FG+VLVPTEEVIEMRAGQ+R+SERKFFP
Sbjct: 2   KRWYVVHAYSGFEKSVAQALRDRIARTEMEERFGDVLVPTEEVIEMRAGQKRRSERKFFP 61

Query: 69  GYVLVQMEMNDD---------SWHLVKSIPRVLGFIGGTSDRPAPISDREADAILRRLQE 119
           GYVLVQ+E +D+         SWHLVK  P+V+GFIGGT+DRP PI D EADAIL+R+Q+
Sbjct: 62  GYVLVQIETHDEAGIPRIDNESWHLVKETPKVMGFIGGTADRPLPIRDEEADAILQRVQD 121

Query: 120 TTASPTHRVIFEPGEVVRVCDGPFADFNGTVEEVDYDKSRVKVSVMIFGRSTPVELDFSQ 179
               P  +V+FEPG++VRV DGPF DFNG VEEV+Y+KSR++V+V+IFGRSTPVEL+F Q
Sbjct: 122 GVEKPRPKVLFEPGQMVRVTDGPFNDFNGVVEEVNYEKSRLRVAVLIFGRSTPVELEFGQ 181

Query: 180 VEKG 183
           VEKG
Sbjct: 182 VEKG 185