Pairwise Alignments

Query, 183 a.a., transcription antitermination protein NusG (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 184 a.a., NusG antitermination factor (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  192 bits (489), Expect = 2e-54
 Identities = 97/185 (52%), Positives = 130/185 (70%), Gaps = 3/185 (1%)

Query: 1   MTEA--KEAKKRWYVVQAFSGYEGRVCKSLIEYIKMHGMEQYFGEVLVPTEEVIEMRAGQ 58
           MTE+    AK RW++V  +SG+E RV +++ E I+    +    EV+VPTE+VIE+  G+
Sbjct: 1   MTESIPTTAKARWFIVHTYSGFEQRVEQTIREMIRTGQAQGLIEEVVVPTEKVIELVKGE 60

Query: 59  RRKSERKFFPGYVLVQMEMNDDSWHLVKSIPRVLGFIGGTSDRPAPISDREADAILRRLQ 118
           +R S RKF+PGYV+V+M M D SWHLV+SIP+V GF+GG  +RP P+ D EA+ IL  ++
Sbjct: 61  KRTSTRKFYPGYVMVKMAMTDFSWHLVQSIPKVTGFVGG-KNRPTPMRDSEAERILTMME 119

Query: 119 ETTASPTHRVIFEPGEVVRVCDGPFADFNGTVEEVDYDKSRVKVSVMIFGRSTPVELDFS 178
                P  +  FE G+ VRV DGPF  FNG VE+V+YDK +++VSV IFGR TPVELDF 
Sbjct: 120 SRQEQPRPKFNFERGDEVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFV 179

Query: 179 QVEKG 183
           QV KG
Sbjct: 180 QVSKG 184