Pairwise Alignments

Query, 183 a.a., transcription antitermination protein NusG (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 178 a.a., transcription antitermination protein nusG from Sphingomonas koreensis DSMZ 15582

 Score =  182 bits (462), Expect = 3e-51
 Identities = 91/175 (52%), Positives = 125/175 (71%), Gaps = 3/175 (1%)

Query: 10  RWYVVQAFSGYEGRVCKSLIEYIKMHGMEQYFGEVLVPTEEVIEMRAGQRRKSERKFFPG 69
           RWY++ A+SG+E +V   ++      G++     V VP E V E+R G++ +SERKFFPG
Sbjct: 3   RWYIIHAYSGFENKVRDQILSDATRLGLDALVEAVEVPVETVTEVRRGKKVQSERKFFPG 62

Query: 70  YVLVQMEMNDDSWHLVKSIPRVLGFIGGTSDRPAPISDREADAILRRLQETTASPTH--R 127
           YVL ++ MNDD +HLVK+ P+V GF+ G+S +P PIS+ EA  IL   +E  A+P    +
Sbjct: 63  YVLAKLAMNDDVYHLVKNTPKVTGFL-GSSGKPQPISEAEAARILNTKEEAAAAPKTQIK 121

Query: 128 VIFEPGEVVRVCDGPFADFNGTVEEVDYDKSRVKVSVMIFGRSTPVELDFSQVEK 182
           V +E G+ V+V +GPFA FNG VEE+D+DKS+VKVSV IFGR+TPVELDF QVE+
Sbjct: 122 VDYEIGDAVKVLEGPFASFNGVVEELDFDKSKVKVSVSIFGRATPVELDFDQVER 176