Pairwise Alignments

Query, 255 a.a., general secretion pathway protein J (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 259 a.a., general secretion pathway protein J (RefSeq) from Shewanella loihica PV-4

 Score =  364 bits (934), Expect = e-105
 Identities = 180/258 (69%), Positives = 209/258 (81%), Gaps = 5/258 (1%)

Query: 1   MSSKRTNAHRGFTLLEMLIAIAIFAMLGLAANAVLSTVLTNDEVTKNFSTRLKALQQGFG 60
           M   +T   +GFTLLEMLIAIAIFAMLGLAANAVLSTV+ NDEVT  F+ RLK+LQQGFG
Sbjct: 1   MCLSKTKRAQGFTLLEMLIAIAIFAMLGLAANAVLSTVMKNDEVTAEFAQRLKSLQQGFG 60

Query: 61  AIERDLGQMVARTPRLLEGGRGTTVFQTGNDILDSESEALVFYRLGWLNPDGLLPRGSLQ 120
           A+ERD GQMVARTPRLLEGGRG+TV QTG D+ DSESEA+VFYR+GWLNPDGLLPRGSLQ
Sbjct: 61  ALERDFGQMVARTPRLLEGGRGSTVIQTGKDLFDSESEAIVFYRIGWLNPDGLLPRGSLQ 120

Query: 121 SVAYVVREGKLERWYFPYPEPEFGAEPIKTVIIDKVLSVEYSFFMEDKWERKVEATKLPK 180
           SVAYVV+E  LERWYFPYPEPEFGAEPIKTV+I  VLSVEYSF++EDKW+RK +AT LPK
Sbjct: 121 SVAYVVQENNLERWYFPYPEPEFGAEPIKTVVIKNVLSVEYSFYVEDKWQRKFDATSLPK 180

Query: 181 AIAMEIEIEGLGKIQRKFMLPLGAAAPEKSKEEGNKDENTEDNKEDNGDSD-----NNGD 235
           AIAMEIE+EGLGK+QRKF+LPLGA   E      N + N  +N  +NG ++     NN  
Sbjct: 181 AIAMEIEVEGLGKVQRKFLLPLGAMLSENGSGNNNGNNNGNNNGNNNGSNNGNNGGNNSG 240

Query: 236 GSGNGEEDPGKGDPENED 253
           G+ +G +D G G  E++D
Sbjct: 241 GNSDGGKDGGSGGKEDDD 258