Pairwise Alignments

Query, 190 a.a., general secretion pathway protein H (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 194 a.a., type II secretion system protein H from Vibrio cholerae E7946 ATCC 55056

 Score = 75.9 bits (185), Expect = 4e-19
 Identities = 50/186 (26%), Positives = 93/186 (50%), Gaps = 6/186 (3%)

Query: 8   GFTLMEVMLVILLMGLTAAGVTMSIGNSGPQQALEKTAQQFIAATELVLDETVLSGQFIG 67
           GFTL+E++LV++L+  +A  V  +   S   +A + +AQ F     L+ +E +LSGQ  G
Sbjct: 6   GFTLLEILLVLVLVSASAVAVIATFPVSVKDEA-KISAQSFYQRLLLLNEEAILSGQDFG 64

Query: 68  IVVEKTSYQFVFYK---DGKWNPLEKDRILSEKQMEPGVVINLVLDGLPLVQEDE--QDE 122
           + ++  + +  F +   D  W   + D++ ++  ++ G+ ++  L G    ++D      
Sbjct: 65  VRIDVDTRRLTFLQLTADKGWQKWQNDKMTNQTTLKEGLQLDFELGGGAWQKDDRLFNPG 124

Query: 123 SWFEEPLIEPSSEDKKKHPEPQILLFPSGEMSAFELSFITKTDKGPLDVLVVGDALGRLT 182
           S F+E +     +++K+ P PQ+ +  SGE++ F LS   K  +      V     G L 
Sbjct: 125 SLFDEEMFADEKKEQKQEPAPQLFVLSSGEVTPFTLSIFPKGQEPDEQWRVTAQENGTLR 184

Query: 183 LGRPDE 188
           L  P E
Sbjct: 185 LLAPGE 190