Pairwise Alignments

Query, 308 a.a., putative SAM-dependent methyltransferase (RefSeq) from Shewanella oneidensis MR-1

Subject, 362 a.a., ribosomal RNA large subunit methyltransferase F from Vibrio cholerae E7946 ATCC 55056

 Score =  301 bits (770), Expect = 2e-86
 Identities = 148/303 (48%), Positives = 199/303 (65%), Gaps = 5/303 (1%)

Query: 2   HLHGYDFVALMASFPKLKAFVRPTAYGALSIDFADPLAVKNLNAALLKQHYQIDFWDIPK 61
           H   YDF AL+   P+L++ V     G  +I+FADP++VK LN ALL  HY + +WDIP+
Sbjct: 55  HRGQYDFPALIKVVPELQSHVMKNPKGQWTINFADPISVKLLNKALLVLHYGVTYWDIPE 114

Query: 62  GALCPPIPGRVDYVHYLADLLFEGATAPRVEQVCALDIGTGANGIYAILGQQVYGWQFVA 121
           G LCPPIPGR DY+H +ADLL +G       QV ALDIG GAN IY I+G   YGW +V 
Sbjct: 115 GFLCPPIPGRADYIHRVADLLLKGNPQLNHSQVRALDIGVGANCIYPIVGVTEYGWSWVG 174

Query: 122 SDINPQSLANVQRIIDNNSCLQGHVTLRRQRDENAIFKGIIEAADRFELTLCNPPFHASL 181
           SD++P S+     I+ +NS LQGH+  R Q++   IF GII A +R+ +T CNPPFHASL
Sbjct: 175 SDVDPVSIQQASLIVQSNSKLQGHIECRLQKNSQHIFNGIIGANERYTVTTCNPPFHASL 234

Query: 182 REASEGSQRKVRNLQLSRGEK-----PKATGASLNFGGQAAELWCQGGEKQFLATMIRES 236
            +A +G+QRK+ NLQ ++ +K     P  + + LNFGGQ AELWC GGE  F+  M  ES
Sbjct: 235 ADAQQGTQRKLTNLQANQRKKGRLATPTLSHSRLNFGGQKAELWCPGGEAAFIGKMAVES 294

Query: 237 HMFAEQCLWFTSLVSKQENLKPCYQALAKLGVDTVKTIEMQQGNKVTRVLAWSFHSQAKR 296
             FA+Q LWF +L+SK +N++   + L KLG  ++  IEM QG K++R +AWSF +  +R
Sbjct: 295 QQFAQQVLWFRTLISKGDNVRGMKKQLEKLGAQSIHVIEMAQGQKISRFIAWSFQNAEQR 354

Query: 297 LRW 299
             W
Sbjct: 355 KLW 357