Pairwise Alignments

Query, 348 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 897 a.a., Osmosensitive K+ channel Signal Transduction Histidine Kinase (NCBI) from Rhodospirillum rubrum S1H

 Score =  144 bits (363), Expect = 9e-39
 Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 6/248 (2%)

Query: 105 ALTSSKLAKHYRRQQDALEQAQLRNSILLSVSHDLRTPLATIIGTLTTLKEYQPKLSPAQ 164
           A+  + L       + A E+ +LR ++L S+SHDLRTPL +I+G+ + L  YQ  LS   
Sbjct: 640 AIERTALVADIEAARVAGERDRLRTALLSSLSHDLRTPLVSIMGSASALVNYQDTLSDDA 699

Query: 165 TEELIDSAAAESHRLHQYIENLLQANKLQHGALKFSLDEANIREVLQRTIARFQ--TEQP 222
             EL  +   E+ RL+++++NLL   KL  GALK  +D A+ R+++   + R +    Q 
Sbjct: 700 ERELALTIQDEAERLNRFVQNLLDMTKLGAGALKPRIDWADFRDIVGGALERAKRLIGQR 759

Query: 223 RIQIQSEPELPSLMICSSLIEQAIFNVLDNALHYSPATQPVTVSLYRHQHMLRIDIQDQG 282
           +++I    + P L + S L+EQ +FN++DNA  Y+P    +TV     +  + ++I DQG
Sbjct: 760 KVRIDLSDDFPLLCVDSVLMEQVVFNLIDNACKYTPPGSAITVWGRPRRDKVVVEICDQG 819

Query: 283 KGIAPSQTGAIFELFYR--QHPTTDGGAGLGLPVAKGIITAHNGTISAEKVAH--GSLIR 338
            GI  +    +F++FYR         G GLGL + +G++ AH GTI+AE   +  G+ I 
Sbjct: 820 PGIPEADREQVFDMFYRVKAQDAQIAGTGLGLAICRGLVEAHGGTIAAEPGINDCGTCIV 879

Query: 339 IALPITKE 346
           I LP+  E
Sbjct: 880 ITLPLLVE 887



 Score = 46.6 bits (109), Expect = 3e-09
 Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 1/116 (0%)

Query: 25  LVVVLITSYFIDVFSGSAIAVLLILQL-AVVVVALQCSANYAYFVAVFGAVSFNFLFTAP 83
           L V L T + + +     +  + +  L AV++VA++     + F ++   + ++FLFT P
Sbjct: 405 LAVALATGFSVLIDMWMPVPNISVAYLMAVLLVAMRLGLAPSIFASLLSFLIYSFLFTEP 464

Query: 84  RYSLQMLNVEDIVNLTVFLLAALTSSKLAKHYRRQQDALEQAQLRNSILLSVSHDL 139
           R +L + +  +I+ +  FL+AA+  S L    R Q  A   +  R   L   S  +
Sbjct: 465 RLTLAITDSHNILTMVFFLVAAVIVSNLGSRLREQVQATRLSARRTGTLYDFSRKI 520