Pairwise Alignments

Query, 348 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 918 a.a., sensor protein KdpD from Herbaspirillum seropedicae SmR1

 Score =  107 bits (267), Expect = 1e-27
 Identities = 78/256 (30%), Positives = 129/256 (50%), Gaps = 31/256 (12%)

Query: 114 HYRR-QQDAL---EQAQLRNSILLSVSHDLRTPLATIIGTLTTLKEYQPKLSPAQTEELI 169
           HY    QDAL   E  +LRNS+L ++SHDLRTPL +++G+   L         A    L 
Sbjct: 669 HYAEVAQDALVTMESERLRNSLLSAISHDLRTPLTSLVGSADVL---------AANARLD 719

Query: 170 DSAAA-------ESHRLHQYIENLLQANKLQHGALKFSLDEANIREV---LQRTIARFQT 219
           D A A       +S ++   + NLL   +LQ G +  +     + E+     R +A+   
Sbjct: 720 DDARAMARTISEQSQKMVGLMNNLLDMARLQAGVVTLNRQWNALEELAGSALRLLAK-AL 778

Query: 220 EQPRIQIQSEPELPSLMICSSLIEQAIFNVLDNALHYSPATQPVTVSLYRHQ----HMLR 275
           E  ++  +  PELP L + + L+E+ + N+++NA+ YSP   P+ +S +         ++
Sbjct: 779 EGRQVDTRIAPELPLLRVDAVLLERVLANLVENAIKYSPPGTPIGISAHVEHGDGAPQVK 838

Query: 276 IDIQDQGKGIAPSQTGAIFELFYR-QHPTTDGGAGLGLPVAKGIITAHNGT--ISAEKVA 332
           + + DQG+G  P+ T   FE F R  + +   G GLGL + + II AH G   I+ ++  
Sbjct: 839 VCVMDQGRGFPPTMTQHAFEKFTRGDNESATPGVGLGLAICRAIIEAHQGRIWIAPQEAG 898

Query: 333 HGSLIRIALPITKESA 348
            G+ +   LP+  + A
Sbjct: 899 QGATVCFTLPVETQPA 914



 Score = 51.2 bits (121), Expect = 1e-10
 Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 1/126 (0%)

Query: 14  RTHPALFTAMLLVVVLITSYFIDVFSGSAIAVLLILQLAVVVVALQCSANYAYFVAVFGA 73
           RT   L+      +    ++ +D     A  ++L L + V++VA++     +  V+V   
Sbjct: 406 RTRGTLWAVASCAITTTLAFLLDGKLHPANVIMLYL-VGVMLVAMRYGRAASALVSVLSV 464

Query: 74  VSFNFLFTAPRYSLQMLNVEDIVNLTVFLLAALTSSKLAKHYRRQQDALEQAQLRNSILL 133
           +SF+F F  PR+S+ + + + ++ L V L  +L  S LA   RRQ     Q + R + L 
Sbjct: 465 LSFDFFFVDPRFSITVSDAQYLLTLAVMLAVSLFISSLAARLRRQASVAMQREARAANLY 524

Query: 134 SVSHDL 139
            +  +L
Sbjct: 525 MLGKEL 530