Pairwise Alignments

Query, 188 a.a., topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 867 a.a., DNA topoisomerase I, bacterial from Pseudomonas stutzeri RCH2

 Score = 47.8 bits (112), Expect = 6e-10
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 24  CPECGSELSVKHSKHGSFIGCNNYPNCAYTRPLVQHESIETQVIEGSKCPECGHE----- 78
           C +CGSE+ +K  + G F GC N   C  TR L+++       ++  K PE   E     
Sbjct: 712 CDKCGSEMQLKTGRFGKFFGCTN-AECKNTRKLLKNGEAAPPKMDAVKMPELKCEKVDDT 770

Query: 79  LAVKSGRFGIFIGCTQYPSCTHIERP 104
             ++ G  G+F+  +Q+P       P
Sbjct: 771 YVLRDGASGLFLAASQFPKNRETRAP 796



 Score = 42.0 bits (97), Expect = 3e-08
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 13/109 (11%)

Query: 44  CNNYPNCAYTRPLVQHESIETQVIEGS--KCPECGHELAVKSGRFGIFIGCTQYPSCTHI 101
           C N P+C+     ++      +  EG   +C +CG E+ +K+GRFG F GCT    C + 
Sbjct: 684 CGNNPDCSGYE--IEKGQYRIKGYEGPSLECDKCGSEMQLKTGRFGKFFGCTN-AECKNT 740

Query: 102 ER--PDQESDKPQ---VACPECKTGKLEHR-TSRFGKG--FYACSAYPK 142
            +   + E+  P+   V  PE K  K++     R G    F A S +PK
Sbjct: 741 RKLLKNGEAAPPKMDAVKMPELKCEKVDDTYVLRDGASGLFLAASQFPK 789



 Score = 40.0 bits (92), Expect = 1e-07
 Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 29/157 (18%)

Query: 24  CPECGSELSVKHSKHGSFIGCNNY-----PNCAYTRPLVQHESI--------ETQVIEGS 70
           C  CG  + ++ +  G F+GC+ Y       C  T  LV  + I        E++V+ G 
Sbjct: 601 CKVCGRPMMIRTASTGVFLGCSGYSLPPKERCKSTVNLVPGDEIAADDEGESESRVLLGK 660

Query: 71  -KCPECGHE----LAVKSGRFGIFIGCTQYPSCT--HIERPD---QESDKPQVACPECKT 120
            +CP C       L  ++ +  I   C   P C+   IE+     +  + P + C +C +
Sbjct: 661 HRCPICSTAMDAYLLDETQKLHI---CGNNPDCSGYEIEKGQYRIKGYEGPSLECDKCGS 717

Query: 121 GKLEHRTSRFGKGFYACSAYPKCKFIVNYPPVGETCP 157
            +++ +T RFGK F+ C+   +CK        GE  P
Sbjct: 718 -EMQLKTGRFGK-FFGCT-NAECKNTRKLLKNGEAAP 751



 Score = 32.0 bits (71), Expect = 3e-05
 Identities = 32/145 (22%), Positives = 47/145 (32%), Gaps = 30/145 (20%)

Query: 72  CPECGHELAVKSGRFGIFIGCTQY-----PSC---------THIERPDQESDKPQV---- 113
           C  CG  + +++   G+F+GC+ Y       C           I   D+   + +V    
Sbjct: 601 CKVCGRPMMIRTASTGVFLGCSGYSLPPKERCKSTVNLVPGDEIAADDEGESESRVLLGK 660

Query: 114 -ACPECKTGKLEHRTSRFGKGFYACSAYPKCK---------FIVNYPPVGETCPSCGFGI 163
             CP C T    +      K  + C   P C           I  Y      C  CG  +
Sbjct: 661 HRCPICSTAMDAYLLDETQK-LHICGNNPDCSGYEIEKGQYRIKGYEGPSLECDKCGSEM 719

Query: 164 LVERKGAAGMRLECPQKSCKYKRAL 188
            + + G  G    C    CK  R L
Sbjct: 720 QL-KTGRFGKFFGCTNAECKNTRKL 743