Pairwise Alignments

Query, 188 a.a., topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 959 a.a., DNA topoisomerase I from Azospirillum brasilense Sp245

 Score = 52.4 bits (124), Expect = 2e-11
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 11/101 (10%)

Query: 1   MMSKIDEQL------FSAHEHALEKEYELCPECGS-ELSVKHSKHGSFIGCNNYPNCAYT 53
           +++ +DE+L       +A+  +   +  +CP C    L +K  K G+FIGC+ YP+C YT
Sbjct: 582 VLTTLDEELGPHFFPTNANSDSPGHDPRVCPVCSQGRLGLKLGKMGAFIGCSRYPDCRYT 641

Query: 54  RPLVQHESIETQVIEGSK----CPECGHELAVKSGRFGIFI 90
           RPL        +  EG +     PE    + V+ G +G +I
Sbjct: 642 RPLAVANDENGEAQEGPRELGNDPETSLPVTVRRGPYGAYI 682



 Score = 36.6 bits (83), Expect = 1e-06
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 72  CPECGH-ELAVKSGRFGIFIGCTQYPSCTH 100
           CP C    L +K G+ G FIGC++YP C +
Sbjct: 611 CPVCSQGRLGLKLGKMGAFIGCSRYPDCRY 640



 Score = 32.7 bits (73), Expect = 2e-05
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 105 DQESDKPQVACPECKTGKLEHRTSRFGKGFYACSAYPKCKF 145
           D     P+V CP C  G+L  +  + G  F  CS YP C++
Sbjct: 602 DSPGHDPRV-CPVCSQGRLGLKLGKMG-AFIGCSRYPDCRY 640