Pairwise Alignments

Query, 188 a.a., topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 873 a.a., type I DNA topoisomerase from Pseudomonas fluorescens SBW25-INTG

 Score = 48.9 bits (115), Expect = 3e-10
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 24  CPECGSELSVKHSKHGSFIGCNNYPNCAYTRPLVQHESIETQVIEGSKCPECGHELA--- 80
           C +CGSE+ +K  + G F GC N P C  TR L++        ++  K PE   E     
Sbjct: 715 CDKCGSEMQLKTGRFGKFFGCTN-PTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDT 773

Query: 81  --VKSGRFGIFIGCTQYPSCTHIERP 104
             ++ G  G+F+  +Q+P       P
Sbjct: 774 YILRDGASGLFLAASQFPKNRETRAP 799



 Score = 47.0 bits (110), Expect = 1e-09
 Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 18/132 (13%)

Query: 24  CPECGSELS--VKHSKHGSFIGCNNYPNCAYTRPLVQHESIETQVIEGS--KCPECGHEL 79
           CP C + +   +   KH   I C N P+C      ++  +   +  EG   +C +CG E+
Sbjct: 666 CPICSTAMDAYLLDEKHKLHI-CGNNPDCNGYE--IEEGTYRIKGYEGPSLECDKCGSEM 722

Query: 80  AVKSGRFGIFIGCTQYPSCTHIERPDQESD-----KPQVACPECKTGKLEH----RTSRF 130
            +K+GRFG F GCT  P+C +  +  +  D        V  PE K  K+      R    
Sbjct: 723 QLKTGRFGKFFGCTN-PTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGAS 781

Query: 131 GKGFYACSAYPK 142
           G  F A S +PK
Sbjct: 782 GL-FLAASQFPK 792



 Score = 42.4 bits (98), Expect = 2e-08
 Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 25/155 (16%)

Query: 24  CPECGSELSVKHSKHGSFIGCNNY-----PNCAYTRPLVQHESI--------ETQVIEGS 70
           C  CG  + ++ +  G F+GC+ Y       C  T  LV  + I        E+ V+ G 
Sbjct: 604 CLTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVLRGK 663

Query: 71  -KCPEC--GHELAVKSGRFGIFIGCTQYPSCTHIERPD-----QESDKPQVACPECKTGK 122
            +CP C    +  +   +  + I C   P C   E  +     +  + P + C +C + +
Sbjct: 664 HRCPICSTAMDAYLLDEKHKLHI-CGNNPDCNGYEIEEGTYRIKGYEGPSLECDKCGS-E 721

Query: 123 LEHRTSRFGKGFYACSAYPKCKFIVNYPPVGETCP 157
           ++ +T RFGK F+ C+  P CK        G+  P
Sbjct: 722 MQLKTGRFGK-FFGCT-NPTCKNTRKLLKSGDAAP 754



 Score = 31.6 bits (70), Expect = 4e-05
 Identities = 33/146 (22%), Positives = 48/146 (32%), Gaps = 32/146 (21%)

Query: 72  CPECGHELAVKSGRFGIFIGCTQYPSCTHIER--------------PDQESDKPQVA--- 114
           C  CG  + +++   G+F+GC+ Y S    ER               D E +   +    
Sbjct: 604 CLTCGRPMQIRTASTGVFLGCSGY-SLPPKERCKATVNLVPGDEIAADDEGESESLVLRG 662

Query: 115 ---CPECKTGKLEHRTSRFGKGFYACSAYPKCK---------FIVNYPPVGETCPSCGFG 162
              CP C T    +      K  + C   P C           I  Y      C  CG  
Sbjct: 663 KHRCPICSTAMDAYLLDEKHK-LHICGNNPDCNGYEIEEGTYRIKGYEGPSLECDKCGSE 721

Query: 163 ILVERKGAAGMRLECPQKSCKYKRAL 188
           + + + G  G    C   +CK  R L
Sbjct: 722 MQL-KTGRFGKFFGCTNPTCKNTRKL 746